Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04772 ATGAGGTGGGAAAAGGTTGAGGTGAAGGCGATAGGCACAGAGGGTGGTGGAGGTGGAAATGAGGTGTATGGACCAGGTAAGAGGTGGGGTCATACCTGCAACGCCGTCAAAGGTGGGAGACTTGTCTATGTCTTCGGTGGATACGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTTGACACTATGAAGCAGACTTGGACTCAACCCACTATAAAAGGCTCCCCGCCTACACCCAGGGACAGCCACACTTGCACAGCCATTGGTGATAATCTGTTTGTGTTTGGGGGTACAGATGGGATGAACCCTCTCAAGGATTTGCACATATTAGACACTTCATTGCATACATGGATTTCTCCCACAATAAGAGGAGAAGGGCCACCTGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGAAAACGCCTATTCATCTTTGGTGGTTGTGGAAAATCTACAGATAGTATTAATGAGGTCTACTACAATGATCTTTACATATTAAATACAGAGACATTTGTTTGGAAGTGTGCTACAACATCAGGCACTCCACCATCTCCTCGTGATAGCCACTCTTGTTCATCTTGGAAAAATAAAATTATTGTAATAGGAGGTGAAGACGGGCATGATTATTATTTGTCTGATGTCCATATCCTTGACACTGATACTTTAATTTGGAGGGAGCTGAGTACATCAGGCCAATTGTTGCCTCCTCGAGCTGGTCATTCCACTGTTTCTTTTGGCAAGAACTTGTTTGTTTTTGGTGGATTTACAGATGCCCAAAATCTCTATAATGACCTTTATATGCTTGATATTGACACTGGTGTTTGGACAAATGTTACAACTGCAATCAATGGTCCTTCTGCTAGATTTTCTGTGGCGGGTGACTGTTTAGACCCTTTTAAGGGTGGTGTTCTTGTATTCATTGGTGGTTGTAATAAAAGTCTTGAGGCCCTGGATGATATGTATTACTTATATACAGGGATTGCTCGGGAAAGTGAACAGAGACCAGAGAAGTTATCTTTAAGGAAGCAATTGAAACTTAAATGCCAAGAACAAAATCCCAATCCTAGCCAAAATCAAGTTTTAGTAAGATATGGAGTGGGTTCTGATATGGGCCAGATAATGTCAGTGTTGAATTATAGCCAGCCAACTAGGCTAAATATCCCAGTAAACCAATCACTACCTCCTGGAAAGAAAATGTTTGAAGCCAAGGTCACCGAAAACATCTCAGAAGGATATAGTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAATTCTGTTTTTAAACAAGCCAAATTCTCTGTACTCAGCTGCTCATACTCCCAGTAGGAAAAGGACTATTGGTGAAATTGATAGTGTTGTCTCGAATGGTATACACTCTAACCAATTAAAGACTCCTAAAGTACTCGAGCAAAATCAAATGGAAAACCCAGAAGCATTTTGTGGAGACGGTTCAGTATCTCATGAACACCACAATGAATCCATTGCAGCGGTAATGTCAAGTAGCCCAATGACTGCCAATGCTTCTGATACCCATAAGGTTCCTGCCAACCCAGAACCAGAAGCTGTTGCTTTGAATCGAAATGATGAAAAACCCATATCCTTAAGTGGAAACTTGGAAAATGATGGAGCAAATGACGTGACAAGTTCCAAAGATGAGGTGCAAACAAATGACCAAACAAATGTGCCAATTTCCAACTTTGAAGTTCCATTACATGATACGAAAACTCCAAATTACAACACTGAATTTTTGAAACCTGCTGCAGCTGAGAGTGCTTTGTGCCTGTCAAATCAAGGTACAGTGGCGGATTCCACAACTCCAACAATAGAATGCAGCGAAGCAGCAAAATTAATATGA 1863 0.4171 MRWEKVEVKAIGTEGGGGGNEVYGPGKRWGHTCNAVKGGRLVYVFGGYGKDNCQTNQVHVFDTMKQTWTQPTIKGSPPTPRDSHTCTAIGDNLFVFGGTDGMNPLKDLHILDTSLHTWISPTIRGEGPPAREGHSAAVVGKRLFIFGGCGKSTDSINEVYYNDLYILNTETFVWKCATTSGTPPSPRDSHSCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGVWTNVTTAINGPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLRKQLKLKCQEQNPNPSQNQVLVRYGVGSDMGQIMSVLNYSQPTRLNIPVNQSLPPGKKMFEAKVTENISEGYSIETVIDGKPLRGILFLNKPNSLYSAAHTPSRKRTIGEIDSVVSNGIHSNQLKTPKVLEQNQMENPEAFCGDGSVSHEHHNESIAAVMSSSPMTANASDTHKVPANPEPEAVALNRNDEKPISLSGNLENDGANDVTSSKDEVQTNDQTNVPISNFEVPLHDTKTPNYNTEFLKPAAAESALCLSNQGTVADSTTPTIECSEAAKLI 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04772 620 Pfam Galactose oxidase, central domain 186 231 - -
Spst3g04772 620 Pfam Galactose oxidase, central domain 237 279 - -
Spst3g04772 620 Gene3D - 2 154 IPR015915 GO:0005515
Spst3g04772 620 Pfam Kelch motif 128 172 - -
Spst3g04772 620 SUPERFAMILY Kelch motif 77 325 IPR015915 GO:0005515
Spst3g04772 620 MobiDBLite consensus disorder prediction 533 556 - -
Spst3g04772 620 MobiDBLite consensus disorder prediction 530 556 - -
Spst3g04772 620 Gene3D - 155 394 IPR015915 GO:0005515
Spst3g04772 620 Pfam Galactose oxidase, central domain 40 89 - -
Spst3g04772 620 SMART kelc_smart 249 295 IPR006652 GO:0005515
Spst3g04772 620 SMART kelc_smart 41 91 IPR006652 GO:0005515
Spst3g04772 620 SMART kelc_smart 92 141 IPR006652 GO:0005515
Spst3g04772 620 SMART kelc_smart 198 248 IPR006652 GO:0005515
Spst3g04772 620 PANTHER KELCH REPEAT DOMAIN 2 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04772 Spst-Chr3 99467830 99474800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04772 55 314 Acyl Lipid Metabolism Gene Families AT3G05420 29.964 2.57e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04772 - - gmx:100820222 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04772 3 99467830 99474800 Spst3g04772 3 99467830 99474800 ECH
Spst3g04772 3 99467830 99474800 Spst9g02471 9 58354120 58359617 PCT