Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04683 ATGGAGGATTCATCCTGTAATGTTTCAAAGGACGTGGCAAACTCAAGTGAGGAGGAGAACCAACAACGGGCTCATAATACTTCACGCTCGACGGATGTCTCAGACAATAAGGTCTCACAGGAAGGAGATGAAAAAGAAGCTGTGCTGAAAAAGTCGTCCAGAGTTTCAGATGATCCCAAAGAGAAGGGTAAGAAGGCGGCTCTGGCTAGTCTTGTCCTTCCCCAGGACCAAGAGAATGAGAACAATGAAGCTGAGATGCAAAACAAAAGCCCACGTATTGGCGAACTCTACAAGGATCTCGCAGTCCATGTTCTCCTAAAAGTGTCACGGTCTGATTATGGTTCAATTGCTGCATTGAACCGTAGTTTCCGATCCCTCATTCGGAGTGAGGAACTGTATCAGCTGAGGCGGGAAGTGAGTATTGTAGAGCATTGGATTTACTTCTCTTGCAGTCTCCATGAATGGGAGGTATTTGATCCAAACCGTGGCCGTTGGATGCAGTTGCCAAGAATGCCTCCTAATGACTGCTTTATGTGTTCCGATAAGGAGTCGTTGGGTGTTGGTACTGATCTTCTTGTTTTTGGAAGGTCAATATCGGCTCCAGTGGTTTATGAATATAGCCTTTTGACCAACTCCTGGTCATCTGCTGTGAATATGAACATTCCCAGATGCTTATTTGGATCTGCCAGCCTTGGGGTAATTGCCATACTGGCTGGTGGGGTTGATCCATCTGGCGAGGTCCTGAATGTGGCTGAGCTTTATAACTCAAAAACCAAAAGGTGGGAGACTCTTCCAAACATGCATAGAAAAAGGAGGATGTCTTCTGCTGTATTCATGGATGGAAAATTTTATGTGATTGGTGGAATTGCAGAAGACAACAAAACGGAGGTAACGAGCGGTGAGGAGTATGATTTGGAGACCAAAACATGGCGTGAAATACCCGACATGTTCCCTCCGCGAAGTGGAGGAGAACCCAATATGGAGGCTCCTCCTTTGGTTGCAGTTGTAAACAATGTATTGTATGCTGCAGATTGTAACCAGCACATAGTGAAGAGATATGAGAAAAAGGGGAACAAATGGGTGACCATTGGAAGTCTTCCTGAAGGAACATCCTCCATGCGTGGATGGGGAATAGGATTTCGGGCATGTGGAGATCGGCTTATGGTCATTGGTGGGCTTAGTGCTGAGAGTGCAGGTATGACTGAAATTAATTCTTGGGTCCCAAATGAAGGTGCAGTGCAGTGGAACCTGCTTGTCAGAAGGCACATAGGGAGCTTTGTGATTAATTGCGCAGTGATGGGATGCTGA 1308 0.4618 MEDSSCNVSKDVANSSEEENQQRAHNTSRSTDVSDNKVSQEGDEKEAVLKKSSRVSDDPKEKGKKAALASLVLPQDQENENNEAEMQNKSPRIGELYKDLAVHVLLKVSRSDYGSIAALNRSFRSLIRSEELYQLRREVSIVEHWIYFSCSLHEWEVFDPNRGRWMQLPRMPPNDCFMCSDKESLGVGTDLLVFGRSISAPVVYEYSLLTNSWSSAVNMNIPRCLFGSASLGVIAILAGGVDPSGEVLNVAELYNSKTKRWETLPNMHRKRRMSSAVFMDGKFYVIGGIAEDNKTEVTSGEEYDLETKTWREIPDMFPPRSGGEPNMEAPPLVAVVNNVLYAADCNQHIVKRYEKKGNKWVTIGSLPEGTSSMRGWGIGFRACGDRLMVIGGLSAESAGMTEINSWVPNEGAVQWNLLVRRHIGSFVINCAVMGC 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04683 435 MobiDBLite consensus disorder prediction 1 90 - -
Spst3g04683 435 MobiDBLite consensus disorder prediction 36 65 - -
Spst3g04683 435 FunFam F-box/kelch-repeat protein SKIP11 138 420 - -
Spst3g04683 435 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 81 435 - -
Spst3g04683 435 Pfam Kelch motif 271 316 IPR006652 GO:0005515
Spst3g04683 435 Pfam Kelch motif 222 267 IPR006652 GO:0005515
Spst3g04683 435 SUPERFAMILY Kelch motif 151 432 IPR015915 GO:0005515
Spst3g04683 435 Gene3D - 130 424 IPR015915 GO:0005515
Spst3g04683 435 SMART kelc_smart 234 281 IPR006652 GO:0005515
Spst3g04683 435 SMART kelc_smart 282 338 IPR006652 GO:0005515
Spst3g04683 435 SMART kelc_smart 190 233 IPR006652 GO:0005515
Spst3g04683 435 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04683 Spst-Chr3 98638577 98639884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04683 90 313 EF-hand Containing Proteins AT4G39560 25.764 6.11e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04683 - - pvu:PHAVU_003G191300g 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04683 3 98638577 98639884 Spst9g02630 9 60358008 60362671 ECH
Spst3g04683 3 98638577 98639884 Spst3g04683 3 98638577 98639884 ECH
Spst3g02440 3 69488391 69490178 Spst3g04683 3 98638577 98639884 PCT