Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02440 ATGGAACTTTTGTTTTTGCTGCTGCTTTTGCCTCTTGTCGTGGAGACTATGTTGGAAGGTCGCTCCTGCGTGCTACCGAGGTTGTTTCCCAGTTCTTGTCAGGCAGATACCAACTGGTCTTTCATGACATACCTGCCGGACTTGGACACAAAGAATGGCAAGCGCCCTAAAGATGTCGATGACGAAGAAGAACCTCAACCGAGGAAGATTAATAGGAGAGTGGATCCTTGCCATCAAGGCGAGACAACCCAATTTCTTTTTCAACAGCAATCCTGTCACGCTGATGATTTTGTTCTTCCACAAATCGATGAGGATCAGAGCAAGAATTGCGTGTCTTTGAGTAATTTCCAAGGAGTTGAAAAGGCTGAAACATTTTCTATCCAGTTACTGGATGAAGATGAGCATAACCGAGCTGGGAATTCATTGGTGCTGTCCAGTTACCTTCAATCTAATAACCAGGAGGAGGATCAGTCCGGGGATTCATCAGATTCCAGTGGTCAGCAATCTGTTGAACAGCAAATGGAGCAGGAGGCCCCTGATGAGCAGGAAGAGCGTCATGGTGGTGATTCATCGGATTCCGGTTCTCTTTTGCCCCGAATGAACAGGGACAGCTCAATAGCCTGTCTCAGCCGCTGTTCGAGGTCCGATTATGGTTCTCTGGCCTCACTTAATAGGAGCTTTCGGAACACAATCCGAAGTGGTGAGCTGTATAGGTGGAGGAGACTGAGTGGCATAGTAGAGCACTGGATTTATTTTTCCTGTGCCCTCCTCGAATGGGAGGCCTATGATCCAATCCGCCAAAGGTGGATGCATTTACCAAGGATGGCTTCTAATGAATGCTTCATGTGTGCAGATAAGGAGTCTTTAGCTGTAGGTACTGAACTTATTGTATTTGGCAGGGATCTGATATCTCATGTCATTTACAGATACAGTCTTCTGACTAACTCATGGTCATCTGGAATGAGGATGAATGCTCCAAGATGCTTGTTTGGATCTGCCAGCCTTGGGGAGATTGCTATTTTGGCTGGTGGCTGTGATTCGGATGGTCGTATCCTTGACTCAGCTGAACTGTACAATTCTGAGAATCAAAGCTGGGAAGTACTCCCTAGCATGAATAAGCCCAGGAAGATGTGCTCTGGGGTATTTATGGATGGAAAGTTTTATGTTATTGGGGGAATTGGTGGAAAAGATTCTAAGCTTCTTACATGTGGTGAGGAATACAATTTACAAACTAGAACATGGACAGAAATTCCTAACATGTCTCCTGGACGCAGCAGAGCTACCTCTGACATGCCTGCGACCGTGGAGGCACCACCTCTGGTTGCGGTTGTAAATAATGAATTATATGCTGCTGATTATGCTGACATGGAGGTAAAAAAATACAATAAAGAGAGAAGATTGTGGCATACCGTTGGGAGACTGCCTGAGCGAGCAGTGTCGATGAATGGTTGGGGTCTTGCATTCAGGGCATGTGGTGATAAGCTAATTGTGATTGGAGGTCTAAGGACTCATGGTGAGGGTTATATTGAACTCAATTCATGTGTGCCTGGTGAAGGACCTCTACAGTGGATTCTACTTGACAGAAAACGCTCTGGCAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA 1632 0.4583 MELLFLLLLLPLVVETMLEGRSCVLPRLFPSSCQADTNWSFMTYLPDLDTKNGKRPKDVDDEEEPQPRKINRRVDPCHQGETTQFLFQQQSCHADDFVLPQIDEDQSKNCVSLSNFQGVEKAETFSIQLLDEDEHNRAGNSLVLSSYLQSNNQEEDQSGDSSDSSGQQSVEQQMEQEAPDEQEERHGGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFRNTIRSGELYRWRRLSGIVEHWIYFSCALLEWEAYDPIRQRWMHLPRMASNECFMCADKESLAVGTELIVFGRDLISHVIYRYSLLTNSWSSGMRMNAPRCLFGSASLGEIAILAGGCDSDGRILDSAELYNSENQSWEVLPSMNKPRKMCSGVFMDGKFYVIGGIGGKDSKLLTCGEEYNLQTRTWTEIPNMSPGRSRATSDMPATVEAPPLVAVVNNELYAADYADMEVKKYNKERRLWHTVGRLPERAVSMNGWGLAFRACGDKLIVIGGLRTHGEGYIELNSCVPGEGPLQWILLDRKRSGNFVYNCAVMGC 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02440 543 Pfam Kelch motif 374 421 IPR006652 GO:0005515
Spst3g02440 543 Pfam Kelch motif 326 372 IPR006652 GO:0005515
Spst3g02440 543 SMART kelc_smart 386 437 IPR006652 GO:0005515
Spst3g02440 543 SMART kelc_smart 294 337 IPR006652 GO:0005515
Spst3g02440 543 SMART kelc_smart 338 385 IPR006652 GO:0005515
Spst3g02440 543 MobiDBLite consensus disorder prediction 150 175 - -
Spst3g02440 543 FunFam F-box/kelch-repeat protein SKIP11 242 528 - -
Spst3g02440 543 SUPERFAMILY Kelch motif 256 513 IPR015915 GO:0005515
Spst3g02440 543 MobiDBLite consensus disorder prediction 150 199 - -
Spst3g02440 543 Gene3D - 243 516 IPR015915 GO:0005515
Spst3g02440 543 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 181 543 - -
Spst3g02440 543 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02440 Spst-Chr3 69488391 69490178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02440 203 419 EF-hand Containing Proteins AT4G39560 23.982 4.81e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02440 - - gmx:100791897 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02440 3 69488391 69490178 Spst3g02440 3 69488391 69490178 ECH
Spst3g02440 3 69488391 69490178 Spst3g04683 3 98638577 98639884 PCT