Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04576 ATGGAAGATAATTATGAAAGGGGAGTAAATGTAATGAATAGGTTTGGTTACACTCCACCCTTGACGGAAACCACAACTCGAAGGAGTTCTTTGAGTCTACAAAGACGCCAAAGTATTGATCCAGCTTTTCCTGTTGATAGGGTGGTTCATAGTCCCTCAAATCAGCGGCTTCATGGAAATGTTTGTGAAATGCAAAGTTCTGATCAATCATCCTTGAGACAAAGCTTTGGATTCGATGGCGCTGGGTCCAGAACCTATTCAATGTCGCACTATCTATTTGGAGGGCAGAAAAGAGAGGTGGAGATAGTGAAAGATGAAGCGGAGAAAAAGAAACAATGGAATTCTAGCAGGCAAGCTTCTTCGACAATGAGTAGTTTGTCCGATTATAAGAAGCTAGACAAGGTGGATAAGACTCAGTCAAGAACTGTAAGTTATGCTGTTTCACCAAAAGCCAAGATAGCATCACAGTCACAGTTGTCCCCAGAATCTCCATCAAAGTCAAGAGCATTAGGAAAAAATCCTCCTGCAAAACCTCCTGTTGATAGGAAGAATGACAACCCGTTGAGAAAACAAAACACAGGTGCTCCCCGTGCGAGAAAACCTGGTCATGGAAGATCACTGTCACAAAGTAATATTGATATATTCTCTGGATCAGCATTGGATACGCCTGAACTGGGACAAGCTTTACTAAACCAAGCAAGGGACATGATTTCATCAGGAGATAATCCGAAGAGAGCTCTTGAATTAGCCCTTCAAGCGAAGAAATTGTTTGAGAGAAATGCTGCTTATGGGAGACCAAGTTTGGATTTGGCCATGTGTTTACATGTTACTGCAGTAATATATTGCAGTTTGGGCAATTTCAATGAAGCAGTTCCATTAGTTGAGCGCTCAATTCAGATTCCTGATATTAAGGAAGGCCAACAACACGCCATTGCTAAATTTGCTGGTCACATGCATCTAGGAGACATTTATGCTATGTTGGGCCAGCTTGAGAAGTCAATTAAGTGCTATTCTGCAGGGTTAGAAGTACAAAGGAGGGTTTTGGGAGAAACAGACCCAAGAGTTGGCGAAACCTGTAGGTATGTGGCTGAGGCTAACTTTCAAGCATTGCAATTTGCGGAGGCAGAGAGGATGTGCCAAATTGCCCTTGATATCCACAGAGCAAATGGTTCACCCTCATCTCTTGAAGAGGCAGCTGATAGGAGGCTAATGGGCCTTATATGTGAAGCAGATGGCAAACATGAAGCAGCCCTAGAGCATCTTGTTCTGGCCAGCATGGCAATGGTAGCAAACGGCCAAGAAGTAGAAGTGGCATCTGTGGACTGCAACATTGGAGACACATACTTATCCTTGGCTAGATATGATGAGGCCATCTTTGCATATCAGAGAGCATTGAAAGTTTTCAAGACCCACAAAGGTGAGAACCATCCTGCTGTGGGATCAGTTTTTGTACGTCTGGCAGACTTGTATTGCAGAACATGGAAGATAAAGGAATCAAAGCAATATTGTGAGAATGCACTTAAAATATATGAAAATCCGATGCCTGGAGTCCCTCCAGAGGACACTGCTAGTGGTTTAATGAATGTCTCAGCCATCTATGAGTCAATGAATGAGCTAGAAGTGGCACTTAAGTTACTTCACAAGGCACTAACCATACTTAATGATGTCTCTGGTCAGAAAAACACAATAGCAGGAATTGAAGCTCAGATGGGGGTCATGTACTATGTGTTGAAGAACTACACTGAATCTTACAATTCTTTCAAGAGTGCCGTGTCGAAGCTTCGTGCTACTGGAGAAAAGAAATCATCCTTCTTTGGTACTGTTCTTAATCAAATGGGACTTGCTTGTGTGCAACTCCATTACTTAGATGAGGCTGCACAATTATTTGAAGAAGCAAAGGTCATTTTGGAACAAGAGAATGGACCCTATCACACTGAAACACTTGGAGTATATGGCAATCTTGCTGGCACGTATGATGCAATTGGCAGGCTGGATGAGGCGATTGAAATTCTGGAAAACATTCTGGTGATGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGATGTGGCTGATGAGAAGAGGAGGTTGGATGAGTTGTTGAAGGAAAAGGGCAGAGTTCGGGACAGAAAAACCAAGTCACTGGAGAACCTTTTTGATTCCTATATTGATCTAACTATGAACAACCTTGTCATCGAGGCATGA 2202 0.4282 MEDNYERGVNVMNRFGYTPPLTETTTRRSSLSLQRRQSIDPAFPVDRVVHSPSNQRLHGNVCEMQSSDQSSLRQSFGFDGAGSRTYSMSHYLFGGQKREVEIVKDEAEKKKQWNSSRQASSTMSSLSDYKKLDKVDKTQSRTVSYAVSPKAKIASQSQLSPESPSKSRALGKNPPAKPPVDRKNDNPLRKQNTGAPRARKPGHGRSLSQSNIDIFSGSALDTPELGQALLNQARDMISSGDNPKRALELALQAKKLFERNAAYGRPSLDLAMCLHVTAVIYCSLGNFNEAVPLVERSIQIPDIKEGQQHAIAKFAGHMHLGDIYAMLGQLEKSIKCYSAGLEVQRRVLGETDPRVGETCRYVAEANFQALQFAEAERMCQIALDIHRANGSPSSLEEAADRRLMGLICEADGKHEAALEHLVLASMAMVANGQEVEVASVDCNIGDTYLSLARYDEAIFAYQRALKVFKTHKGENHPAVGSVFVRLADLYCRTWKIKESKQYCENALKIYENPMPGVPPEDTASGLMNVSAIYESMNELEVALKLLHKALTILNDVSGQKNTIAGIEAQMGVMYYVLKNYTESYNSFKSAVSKLRATGEKKSSFFGTVLNQMGLACVQLHYLDEAAQLFEEAKVILEQENGPYHTETLGVYGNLAGTYDAIGRLDEAIEILENILVMREEKLGTANPDVADEKRRLDELLKEKGRVRDRKTKSLENLFDSYIDLTMNNLVIEA 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04576 733 MobiDBLite consensus disorder prediction 148 210 - -
Spst3g04576 733 Gene3D Tetratricopeptide repeat domain 317 424 IPR011990 GO:0005515
Spst3g04576 733 MobiDBLite consensus disorder prediction 107 127 - -
Spst3g04576 733 Coils Coil 689 709 - -
Spst3g04576 733 Gene3D Tetratricopeptide repeat domain 219 316 IPR011990 GO:0005515
Spst3g04576 733 MobiDBLite consensus disorder prediction 17 35 - -
Spst3g04576 733 Gene3D Tetratricopeptide repeat domain 425 597 IPR011990 GO:0005515
Spst3g04576 733 Gene3D Tetratricopeptide repeat domain 598 705 IPR011990 GO:0005515
Spst3g04576 733 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 45 720 - -
Spst3g04576 733 MobiDBLite consensus disorder prediction 148 167 - -
Spst3g04576 733 Pfam Tetratricopeptide repeat 437 512 - -
Spst3g04576 733 Pfam Tetratricopeptide repeat 607 673 - -
Spst3g04576 733 SMART tpr_5 606 639 IPR019734 GO:0005515
Spst3g04576 733 SMART tpr_5 356 389 IPR019734 GO:0005515
Spst3g04576 733 SMART tpr_5 523 556 IPR019734 GO:0005515
Spst3g04576 733 SMART tpr_5 271 304 IPR019734 GO:0005515
Spst3g04576 733 SMART tpr_5 564 597 IPR019734 GO:0005515
Spst3g04576 733 SMART tpr_5 438 471 IPR019734 GO:0005515
Spst3g04576 733 SMART tpr_5 314 347 IPR019734 GO:0005515
Spst3g04576 733 SMART tpr_5 480 513 IPR019734 GO:0005515
Spst3g04576 733 SMART tpr_5 648 681 IPR019734 GO:0005515
Spst3g04576 733 SUPERFAMILY TPR-like 267 419 IPR011990 GO:0005515
Spst3g04576 733 Pfam MalT-like TPR region 242 428 IPR041617 -
Spst3g04576 733 SUPERFAMILY TPR-like 442 632 IPR011990 GO:0005515
Spst3g04576 733 ProSiteProfiles TPR repeat profile. 438 471 IPR019734 GO:0005515
Spst3g04576 733 MobiDBLite consensus disorder prediction 16 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04576 Spst-Chr3 97520181 97523030 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04576 - - gmx:100813461 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04576 3 97520181 97523030 Spst9g02214 9 49567025 49570002 ECH
Spst3g04576 3 97520181 97523030 Spst3g04576 3 97520181 97523030 ECH
Spst3g04576 3 97520181 97523030 Spst9g02214 9 49567025 49570002 PCT