Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04573 ATGGCCACCCAATCGCCGCCCCGGCCTCCCACTCCCACTGCCACCGACGAAAACCAAGGTTCTGAAGTTGTGCAACCAGCAGGCATGGATCAGCAAAATGCCGGAGAAGAAGAGCCCGCCAAACTGAATTCAACTCAGTCAGTATTTGTAAACTCACAACCATTGAGGGAAGAACAAGTTCAGAATGCTATGAAATTTTTGTCTCACCCAAAAGTTAGAGGTTCACCTGTCATCTATAGGCGATCATTTCTAGAGAAGAAGGGCCTTACAAAGGAGGAGATTGATGAAGCCTTTCGGCGTGTGCCAGATTCAGCTCCAACTGTGCAGACAGCTGGTGTAAATCAAGATGGGCAATTTAAATCATCATCAAACAGTCAGCAACAAACTCAACAACAAACTTTGCAGCCGGGTTTACCTGCTTCTACTGGTGTTAATACTTCATCAGGAACCTTGTTGCGCTCCAGATTTCACTGGTCTCATGCCCTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTATAATAATTAAGAAATCTATTCTCCCTCAGTTAAAATCTTGGATACGTAAGGTTGTCCTTGACAATGATGATGAACAATTAAAGAAAACTGATGACAAACCAACATTGATGGAAGAGGCTGCACAAGCTGCAAAATCAGCTGCAGCTGCGGCTGCCGAAGTAGCAAAAGCAAGCCAAGTGCTGCTGGCTTCAAAAGGTGAAGAGAGGAGATACTTTGTGGAAGTTGTTAGCCTTTTAGACAAACAAGTACAAGAAATGAAGTCAATGACAAATGCCATAAGAAGATTGGAAGGGCAAGAAGATCTTCGAATCAGTCAATCAAGTTCAAAGCAACTGATTGTGAATGGCAAAGTGGACTATGACTTGCGTTCAGTGAGATCTTCATCCCCACCTGCATCTGTTGAACCATCAAGTGGTCTTCACCCAAAGTCATATATGGAGATAATGGCCATGGTTCAAAGAGGAGAGAAGCCTTCCAATATTAGACCTTGGGAGGTTGATCAGGTGCAAAGCACGTCTACTCAGATGCTTCAGTCTGAAGTAAATGGTGAAGATTTGAATACCAAGACCCAGGATACGTCTCTAGTAAATGGGGACGAGCCATTGCCCTGGTGGCAGAGGAAAAATGTCAGAATCAGAGAGATTGACAACGAAAATGAGTCCAATGGAGTACCTTATTCTGCTGCATCCAGTCAGCAGCCAGTCCAACAGCCAGTTCAACGTGTATGGGTTCCTCCTCAACCTCCACCCATAGTTATGCCGGAGGCTGCAGAAGCAATCAGACGCCCAAAACCGGTTGCCCAAAAGGAACAGATGCCAGATAATCAGTCAGTGGCTCATTCTTCTGACAGCTCTGATGACGTGCATAGTGTCTCAAAACCATTGGAATCTGAAGGTGCAGTAGAGGGCAGCAGTGTCAGCTCAGTTCCCAGCTCTAGTGAGATACAAGAGGAACATGAAGTCAAATATGATGAGCAATGA 1509 0.4533 MATQSPPRPPTPTATDENQGSEVVQPAGMDQQNAGEEEPAKLNSTQSVFVNSQPLREEQVQNAMKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDSAPTVQTAGVNQDGQFKSSSNSQQQTQQQTLQPGLPASTGVNTSSGTLLRSRFHWSHALIAVGLLAASGAGTAIIIKKSILPQLKSWIRKVVLDNDDEQLKKTDDKPTLMEEAAQAAKSAAAAAAEVAKASQVLLASKGEERRYFVEVVSLLDKQVQEMKSMTNAIRRLEGQEDLRISQSSSKQLIVNGKVDYDLRSVRSSSPPASVEPSSGLHPKSYMEIMAMVQRGEKPSNIRPWEVDQVQSTSTQMLQSEVNGEDLNTKTQDTSLVNGDEPLPWWQRKNVRIREIDNENESNGVPYSAASSQQPVQQPVQRVWVPPQPPPIVMPEAAEAIRRPKPVAQKEQMPDNQSVAHSSDSSDDVHSVSKPLESEGAVEGSSVSSVPSSSEIQEEHEVKYDEQ 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04573 502 Coils Coil 255 275 - -
Spst3g04573 502 MobiDBLite consensus disorder prediction 1 45 - -
Spst3g04573 502 Pfam Pex14 N-terminal domain 56 100 IPR006785 -
Spst3g04573 502 MobiDBLite consensus disorder prediction 446 461 - -
Spst3g04573 502 MobiDBLite consensus disorder prediction 422 502 - -
Spst3g04573 502 MobiDBLite consensus disorder prediction 14 28 - -
Spst3g04573 502 FunFam Peroxisomal membrane protein PEX14 48 110 - -
Spst3g04573 502 Gene3D - 48 110 IPR036388 -
Spst3g04573 502 MobiDBLite consensus disorder prediction 107 146 - -
Spst3g04573 502 MobiDBLite consensus disorder prediction 100 146 - -
Spst3g04573 502 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 1 496 IPR025655 GO:0005515|GO:0005778|GO:0016560
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04573 Spst-Chr3 97469907 97477614 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04573 K13343 - gmx:100784152 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04573 3 97469907 97477614 Spst3g04573 3 97469907 97477614 ECH
Spst3g04573 3 97469907 97477614 Spst9g02211 9 49517466 49527619 PCT