Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04545 ATGAAACTCATACCCGTCAGACATTCTGCCATGGGTTCCATTTGGATTTGCCATTGCGTTCTGTTACTGTCCATACTTGATACTTCGTTTACTGCAACTATGGCCAATAATGCAACAGATTCCTACTGGCTTCTCAGAATTAAATCAGAATTGGTAGATCCATTAGGAGCACTTGGCAACTGGTCTCCAACAACTCATTACTGCAACTGGAATGGAATAACATGTGCAGTTGATCAGGAACACGTTATTGGCCTGAATTTGTCTGGTTCAGGAATATCTGGTTCCATTTCAGTTGAGTTCAGTCACCTCGCTTCTATTCAAACACTTGATTTGTCTTCAAATTCTCTTTCTGGCTCCATCCCTTCAGAGCTGGGTCAGCTTCAAAATCTAAGAATATTGCACCTATACTCCAATGATCTCTCCGGGAACATTCCTGCAGAGATAGGTAACTTGAGGGAGTTGCAAATTCTTAGAATAGGAGACAACATGTTGACAGGTGAAATTCCACCTAGTATTGCCAATATGAGTGAATTGACAGCTTTGGCAATAGGATACTGCCACTTGAATGGAAGCATACCAGTTGCGATTGGTAAATTGAAGCATCTAATATCTCTTGATTTACAAATGAACAGCCTTAGTGGCCTAGTACCTGAAGAGATTCAAGGCTGTGAAGAGCTCCAGAACTTTGCAGCATCAAACAACATGTTTGAAGGAGATATACCTTCCTCTATGGGGTCTCTTAAATCATTAAAAATTCTGAACCTAGCCAATAACAGTTTATCTGGATCAATTCCTACAGCTTTGAGTCATCTTTCTAACCTGGCATACCTAAATTTGCTTGGAAACAAATTACATGGAGAAATTCCCTCTGAGCTTAATAGTCTGATTCAGCTGCAGAAGCTAGACTTATCCAAAAACAACCTCTCTGGATCAATACCTCTGCTTAATGTAAAATTGCAAAGTCTTGAAACTCTTGTTCTGTCTGACAATGCTCTGACAGGTAGCATTCCAAGTAATTTCTGCCTCAGAGATTCAAAGCTTCAGCAACTTTTCCTGGCTAGAAACATGCTCTCTGGCAAGTTTCCCATGGAGTTACTCAACTGCCCGTCAATCCAACAATTGGATCTCTCTGATAACAGCTTGGAAGGAGAACTTCCTCCCAGCTTGGACAAACTGAAGAACCTCACAGATCTTGTTCTCAACAACAACAGCTTTGTTGGATTTCTACCTCCTGAAATTGGGAACATTAGTAGCTTAGAGGGTCTTTTCCTATTTGGTAACTTCTTCACGGGTAAAATTCCAATGGAGATTGGAAGGCTGCAGAGATTGAGGACCATTTACCTCTATGACAACCAAATGTCTGGACTCATACCGAGAGAGATAACAAACTGCACAAGCTTAGAGGAAATTGACTTCTTTGGTAATCACTTCACAGGGCCCATTCCAGAGACTATAGGTAAGCTGAAGGACTTAGTTGTTCTTCATCTTAGGCAGAATGACTTGTCTGGTCCGATCCCTCCAAGCTTGGGGTACTGTAAGAGACTTCAGATATTGGCCTTAGCAGATAACATGTTGTCTGGTTCCATTCCACCTACCTTCAGTTATCTCTCGAAACTCACTAAAATTACCCTTTACAACAACTCCTTTGAAGGGCCTCTCCCTCATTCACTCTCTTCTCTCAAAAGCCTCAAAATCATCAACTTTTCACACAACAAGTTCAGTGGCAGTTTCTTTCCTCTCACTGGTTCAAATTCTCTTACCATTCTGGATTTGACTAATAACAGCTTGTCAGGTCCCATCCCTTCCACTCTAGCCAATTCTAGAAACCTCAGTCGTCTCAGACTTGGAAAAAATTATCTGACAGGAAACATTCCTCCTGAATTTGGCCAACTCACCGAGCTCAACTTTCTTGATTTATCATTCAACAATTTAACAGGAGAGATGCCACCTCAGCTCTCAAACTCCAAGAAAGTGGAACACATCCTGATGAGTAACAACAGGTTGAATGGCAAATTACCTGTTTGGTTGGGAAGGTTAGAAGAACTTGGTGAGCTAGATCTCTCATACAACAACTTCAGTGGGAGGATACCTTCTGAGCTTGGTAACTGCTCAAAATTGCTCAAGCTTTCTCTTCATCACAACAATCTCTCCGGTGAAATCCCCCACGAGATTGGAAACCTCACTGCCCTTAATGTCTTCAATTTGCAAACGAACGGCTTCTCTGGCGCCATTCCTTCAACAATTCAGCAATGCACAAAACTGTATGAGCTTACGCTCTCAGAGAACTTTTTAACAGGTACCATACCAGTTGAGCTAGGAGGGCTTGCTGAGTTGCAGGTGATATTGGACTTGAGTAAGAATCTCTTCATTGGTGAGATTCCACCATCTCTAGGAAACCTCATGAAGCTAGAGAGACTCAACCTTTCTTTCAACCAACTCGAAGGAAAAGTTCCTCATTCGCTCGGCAAACTCACAAGCCTGCACGTGTTGAATCTCTCAAACAACCATCTTGAAGGCCAGATTCCTCCAACATTTTCGGGATTCCCACTAAGCTCATTTCAGAACAATAACGGCTTGTGCGGTCCACCACTGGGATCATGCTCAGAATCCACTGCACAGGGGAAAATGCAACTATCAAACACACAAGTGGCTGCAATCATTGTTGCCATTGTCTTTACTTCCACAGTGATATGCTTAGTGATGCTGTACATCATGCTTAGGATCTGGTGCAACTGGAGAAAAGTGGCCATTTCAAGTGCAGAAGGTGGCACTATTGCTCACAAGGCAAGGAATGGAGAGTATTGGAATATGAATTCATTTGAGTTGATTCCTTCACCAGATAAGCAGAATTCAGCAACAACAACTTCCTTCTATAGTCTCAAAATGGAAACCATGGAAAATACAAATATGTAA 2913 0.4202 MKLIPVRHSAMGSIWICHCVLLLSILDTSFTATMANNATDSYWLLRIKSELVDPLGALGNWSPTTHYCNWNGITCAVDQEHVIGLNLSGSGISGSISVEFSHLASIQTLDLSSNSLSGSIPSELGQLQNLRILHLYSNDLSGNIPAEIGNLRELQILRIGDNMLTGEIPPSIANMSELTALAIGYCHLNGSIPVAIGKLKHLISLDLQMNSLSGLVPEEIQGCEELQNFAASNNMFEGDIPSSMGSLKSLKILNLANNSLSGSIPTALSHLSNLAYLNLLGNKLHGEIPSELNSLIQLQKLDLSKNNLSGSIPLLNVKLQSLETLVLSDNALTGSIPSNFCLRDSKLQQLFLARNMLSGKFPMELLNCPSIQQLDLSDNSLEGELPPSLDKLKNLTDLVLNNNSFVGFLPPEIGNISSLEGLFLFGNFFTGKIPMEIGRLQRLRTIYLYDNQMSGLIPREITNCTSLEEIDFFGNHFTGPIPETIGKLKDLVVLHLRQNDLSGPIPPSLGYCKRLQILALADNMLSGSIPPTFSYLSKLTKITLYNNSFEGPLPHSLSSLKSLKIINFSHNKFSGSFFPLTGSNSLTILDLTNNSLSGPIPSTLANSRNLSRLRLGKNYLTGNIPPEFGQLTELNFLDLSFNNLTGEMPPQLSNSKKVEHILMSNNRLNGKLPVWLGRLEELGELDLSYNNFSGRIPSELGNCSKLLKLSLHHNNLSGEIPHEIGNLTALNVFNLQTNGFSGAIPSTIQQCTKLYELTLSENFLTGTIPVELGGLAELQVILDLSKNLFIGEIPPSLGNLMKLERLNLSFNQLEGKVPHSLGKLTSLHVLNLSNNHLEGQIPPTFSGFPLSSFQNNNGLCGPPLGSCSESTAQGKMQLSNTQVAAIIVAIVFTSTVICLVMLYIMLRIWCNWRKVAISSAEGGTIAHKARNGEYWNMNSFELIPSPDKQNSATTTSFYSLKMETMENTNM 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04545 970 SUPERFAMILY L domain-like 345 649 - -
Spst3g04545 970 Gene3D Ribonuclease Inhibitor 37 189 IPR032675 -
Spst3g04545 970 PRINTS Leucine-rich repeat signature 298 311 - -
Spst3g04545 970 PRINTS Leucine-rich repeat signature 824 837 - -
Spst3g04545 970 Gene3D Ribonuclease Inhibitor 482 579 IPR032675 -
Spst3g04545 970 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 482 578 - -
Spst3g04545 970 SUPERFAMILY L domain-like 579 865 - -
Spst3g04545 970 SMART LRR_typ_2 824 847 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 631 655 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 319 343 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 127 151 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 103 126 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 800 823 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 679 703 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 392 416 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 199 222 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 440 463 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 247 270 IPR003591 -
Spst3g04545 970 SMART LRR_typ_2 488 512 IPR003591 -
Spst3g04545 970 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 289 385 - -
Spst3g04545 970 Gene3D Ribonuclease Inhibitor 289 382 IPR032675 -
Spst3g04545 970 Pfam Leucine rich repeat 585 644 IPR001611 GO:0005515
Spst3g04545 970 Pfam Leucine rich repeat 781 837 IPR001611 GO:0005515
Spst3g04545 970 Pfam Leucine rich repeat 233 284 IPR001611 GO:0005515
Spst3g04545 970 Pfam Leucine rich repeat 514 573 IPR001611 GO:0005515
Spst3g04545 970 FunFam Uncharacterized protein 386 481 - -
Spst3g04545 970 Gene3D Ribonuclease Inhibitor 190 288 IPR032675 -
Spst3g04545 970 Gene3D Ribonuclease Inhibitor 383 481 IPR032675 -
Spst3g04545 970 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 37 193 - -
Spst3g04545 970 Gene3D Ribonuclease Inhibitor 580 875 IPR032675 -
Spst3g04545 970 FunFam Uncharacterized protein 194 288 - -
Spst3g04545 970 ProSiteProfiles Leucine-rich repeat profile. 297 319 IPR001611 GO:0005515
Spst3g04545 970 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 579 871 - -
Spst3g04545 970 PANTHER UNNAMED PRODUCT 18 539 - -
Spst3g04545 970 Pfam Leucine rich repeat N-terminal domain 39 75 IPR013210 -
Spst3g04545 970 SUPERFAMILY RNI-like 85 406 - -
Spst3g04545 970 Pfam Leucine Rich Repeat 372 392 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04545 Spst-Chr3 97117429 97120341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04545 620 862 Receptor kinase-like Gene Family AT5G46330 35.628 3.13e-33 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04545 - - gmx:100779315 1651.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04545 3 97117429 97120341 Spst3g04545 3 97117429 97120341 ECH
Spst3g04545 3 97117429 97120341 Spst9g02179 9 48275731 48279550 PCT