Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04433 ATGGCAATGGCAACAATGAGGGAGAGTCCTCGGAGCCCAGAAGCGAAATTGGGCATGCGAGTTGAGGATCTTTGGGACATTCAAGAGGCACAGCTAAGTCCTACTGAGAAGCTCAACGCTTGTTTTGAAAGCATCCCTGTCTCTGCGTTTCCTTTGGGTCCTTCAAACAAAGAAATTGAGATCAATTCAGACGCCACCCTGGCTGAAGCAGTTATGACACTGTCACGACACAATGTTTTCAGTGCACCTGTGGTGGATGTTGATGCGCCTGAAGATGCTAGTTGGATTGACAGATACATCGGAATTGTTGAGTTTGCCGGAATTGTTGTATGGATTTTGCATCAGTCTGAACCTGCATCTCCTAGGAGTCCATCTACTCCATCCAGTGCAAAGGCTATTGCGGCTGCGGCTAATGGAGTGAGTTTTGCTATAGAACTTGAAGCTTTAGGCCTTGGCTCTGCTGCAACAACTTCAGGAAACTTTTTTGAGGATCTAACTTCTTCTGAACTTTATAAGAATACCAAGGTTCAAGACATTTCAGGGACATTCCGCTGGGCCCCATTTCTTGCTTTAGAGAGATCAAACTCATTTCTTACCATGCTCTTGCTGCTTTCTAAGTACAAGATGAAGAGTGTTCCTGTGTTGGATTTAGGCTCTGGTACAATAGATAACATTATTACACAATCTGCTGTGATTCATATGCTGGCAGAATGCGTTGGACTTCAGTGGTTTGAAAGCTGGGGAACCAAGAAACTATCTGAAGTTGGTCTTCCCCTGGTTACACCAGATCAGATCATAAAGATTTATGAAGATGAACCAGTCCTTCAAGCATTTAAAGTAATGAGAAAAAAGAGGGTTGGAGCGGTGCCTGTAATTGAGAGAGAGAGCGAAAAGGCATTTGGTAATATAAGCTTGCGAGATGTTCAATTCTTGCTAACTGCACCAGAAATCTATCACGATTATAGAGCCATTACAGTAAAGGACTTCCTGACTGCCGTTAGAAGTTTCTTGGAAAAGAATGAAAACGCATTCCCAATGGTAAGTGAATATGTTACATGCAAAAAGGACTGTACAATCAAAGAGTTGATTCTACTGCTTGATCAAGAGAAGATTCAAAGGGTGTATGTGGTGGACGATGATGGGGATCTGCAAGGACTAATCACACTAAGAGACATAATCTCAAGGCTAGTACACGAACCACGTGGCTATTTTGGTGATTTCTTTGATGGTGTTCTACCTCTGCCTGCAAACACCAGGGTTTAA 1263 0.4307 MAMATMRESPRSPEAKLGMRVEDLWDIQEAQLSPTEKLNACFESIPVSAFPLGPSNKEIEINSDATLAEAVMTLSRHNVFSAPVVDVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPASPRSPSTPSSAKAIAAAANGVSFAIELEALGLGSAATTSGNFFEDLTSSELYKNTKVQDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVLDLGSGTIDNIITQSAVIHMLAECVGLQWFESWGTKKLSEVGLPLVTPDQIIKIYEDEPVLQAFKVMRKKRVGAVPVIERESEKAFGNISLRDVQFLLTAPEIYHDYRAITVKDFLTAVRSFLEKNENAFPMVSEYVTCKKDCTIKELILLLDQEKIQRVYVVDDDGDLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPANTRV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04433 420 ProSiteProfiles CBS domain profile. 54 120 IPR000644 -
Spst3g04433 420 CDD CBS_pair_SF 263 393 - -
Spst3g04433 420 Pfam CBS domain 346 397 IPR000644 -
Spst3g04433 420 Pfam CBS domain 264 308 IPR000644 -
Spst3g04433 420 SUPERFAMILY CBS-domain pair 253 406 IPR046342 -
Spst3g04433 420 ProSiteProfiles CBS domain profile. 260 321 IPR000644 -
Spst3g04433 420 SMART cbs_1 187 236 IPR000644 -
Spst3g04433 420 SMART cbs_1 57 113 IPR000644 -
Spst3g04433 420 SMART cbs_1 349 397 IPR000644 -
Spst3g04433 420 SMART cbs_1 264 313 IPR000644 -
Spst3g04433 420 SUPERFAMILY CBS-domain pair 30 236 IPR046342 -
Spst3g04433 420 Gene3D - 249 399 IPR046342 -
Spst3g04433 420 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 39 396 - -
Spst3g04433 420 ProSiteProfiles CBS domain profile. 346 404 IPR000644 -
Spst3g04433 420 Gene3D - 37 240 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04433 Spst-Chr3 95896421 95899396 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04433 - - gmx:100812388 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04433 3 95896421 95899396 Spst3g04433 3 95896421 95899396 ECH
Spst3g04433 3 95896421 95899396 Spst9g02110 9 43390490 43393203 PCT