Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04407 ATGCACAAGTTATCACCAACCTCAAATTTCTGTGAAAGGAATGAGGGCCACCCAAATGTATCCAATCCCCAATTACAAGATGAGACCAACATGTTCACCACTTTGATTCCCAAATCCCCAACATGTCAACACCATCATCACCAAACACAAAATCCCCACAAAACCCATTTGTCCCTGGCCCTCACCGAAGCCAAGTGCATTTCCAACATATCCTTCTCCATGATCCTTACTGGCCTACTACTCTATTTCCGCTCCATGATCTCCATGCTCTTCCTCGGCCACCTCGGAGAACTCGCTCTTGCAGGTGGCTCCTTGGCCATCGGATTCGCCAACATCACTGGCTACTCTGTTCTTTCTGGCCTCGCCATGGGAATGGAACCCATCTGCGGTCAAGCCTTCGGAGCCAAAAGGTTCAAACTTATCGGCCTCACCATGCAGAGAACCGTGCTACTTCTTCTCCTCACTTCGCTTTTCATCTCATTCTTTTGGCTCAACATCAAGAAACTATTACTCCTATGTGGCCAAGAAGAAGACATAGCGAATGAGGCTCAATTCTATATATATTACTCTCTCCCTGATCTTATATTACAATCGCTGCTGCACCCTCTACGAATCTACCTTCGAAGCCAATCAATAACGCTTCCTCTCACGTGCTGCGCCGCTCTCTCCATTCTCCTCCATGTACCCGTCAATTACCTCTTTGTCTGCCTCCTCAACCTCGGAATCAAAGGCATCGCGTTAAGCGCCGTTGTCACAAACTTCAACCTCGTCGCGTCGTTGGTTATTTACGTTGTGGTCTCGGGCACGCACAAGAAAACGTGGCCGCGTATTTCACGGTCATGTATCAAGGAATGGAAAAGGCTATTGAATCTCGCGATTCCGAGTTGCGTTTCCGTTTGTCTGGAATGGTGGTGGTACGAGATAATGATTTTACTATGCGGGTTGTTAGTAAACCCTCATGCGAGTGTTGCCTCCATGGGGGTTTTGATTCAAACCACGGCTTTGATATACATTTTTCCGTCGTCTTTAAGTTTTGGAGTTTCCACGCGTGTTGGAAACGAGTTGGGTGCAGGGAATCCTGGGCGGGCGAGGATTGCGGCGATTGTGGGACTCTGTTTCAGTTTCGTGTTGGGATTCTCTGCTTTGGTGTTCGCGGTTTCGGTGAGAAAGGTTTGGGCGTCGATGTTCACTGGGGATGGAGAAATCCTTGCTTTGACGTCGATGGTGTTGCCTATCATTGGGCTTTGCGAGCTCGGGAACTGTCCCCAAACGACGGTTTGCGGCGTTTTGAGGGGGACGGCGAGGCCGAAATTGGGGGCGAACATAAACTTGGGTTGCTTCTACCTTGTGGGCATGCCTGTTGCGGTGTGGTTGGGGTTCTTTGCAGGGTTTGACTTCAAAGGGCTGTGGTTGGGGATGTTGGCGGCGCAAGGGTCTTGCATGATCACGATGATGTTCGTGTTGGCGCGGACCAATTGGGAGGGTCAAGCGCTGAGAGCTAAGGAACTCACGTCATGTGATTCTAACGAAGAGAAAAAACCAGTGGAAGTGGAAGAGGAAGAGGAAGAAGAAAAAGAGGAGAAAGAGGTTGAACACCAAGTGGCCAAAGGTTTTTTGGGATCATGTGCCACTAAACAAGTCTCTGATTTAATTGTTTGA 1659 0.4907 MHKLSPTSNFCERNEGHPNVSNPQLQDETNMFTTLIPKSPTCQHHHHQTQNPHKTHLSLALTEAKCISNISFSMILTGLLLYFRSMISMLFLGHLGELALAGGSLAIGFANITGYSVLSGLAMGMEPICGQAFGAKRFKLIGLTMQRTVLLLLLTSLFISFFWLNIKKLLLLCGQEEDIANEAQFYIYYSLPDLILQSLLHPLRIYLRSQSITLPLTCCAALSILLHVPVNYLFVCLLNLGIKGIALSAVVTNFNLVASLVIYVVVSGTHKKTWPRISRSCIKEWKRLLNLAIPSCVSVCLEWWWYEIMILLCGLLVNPHASVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAGNPGRARIAAIVGLCFSFVLGFSALVFAVSVRKVWASMFTGDGEILALTSMVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANINLGCFYLVGMPVAVWLGFFAGFDFKGLWLGMLAAQGSCMITMMFVLARTNWEGQALRAKELTSCDSNEEKKPVEVEEEEEEEKEEKEVEHQVAKGFLGSCATKQVSDLIV 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04407 552 Pfam MatE 294 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst3g04407 552 Pfam MatE 74 233 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst3g04407 552 MobiDBLite consensus disorder prediction 1 26 - -
Spst3g04407 552 NCBIfam MATE family efflux transporter 75 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst3g04407 552 PANTHER MULTIDRUG RESISTANCE PROTEIN 60 493 - -
Spst3g04407 552 MobiDBLite consensus disorder prediction 508 532 - -
Spst3g04407 552 CDD MATE_eukaryotic 63 497 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04407 Spst-Chr3 95646705 95648363 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04407 K03327 - gmx:100778250 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04407 3 95646705 95648363 Spst3g04407 3 95646705 95648363 ECH
Spst3g04407 3 95646705 95648363 Spst2g00338 2 2641859 2643469 PCT