Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04395 ATGGCAAAGAATGTGGGGATTCTCGCTATAGACATCTACTTCCCTTCCACCTGTATTCAACAGGAAGTGCTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACTATTGGACTTGGTCAAGATTGCATGGCATTTTGTACAGAAGTAGAAGATGTCATTTCGATGAGTTTGACAGTAGTTTCTTCCCTTCTAGAGAAGTATAAGATAGATCCTATAAAAATTGGTCGGCTGGAAGTAGGTAGTGAGACTGTGATTGACAAAAGCAAATCCATCAAAACTTTCCTGATGCAGATCTTTGAGAAATATGGAAATACCGATATCGAGGGTGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAGCTCATGGGATGGTCGCTATGGACTTGTCGTCTGCACAGACAGCGCTGTCTATGCCGAAGGACCTGCACGGCCTACTGGTGGAGCTGCCGCTGTTGCCATGCTAATAGGTCCTGATGCTCCCATTGCTTTTGAAAGCAAATTGAGGGGAAGTCATATGGCTCATGCCTATGACTTTTACAAGCCTAATCTTGCCAGTGAATATCCAATTGTTGATGGGAAGCTTTCTCAAACATGTTACCTTATGGCCCTTGATTCTTGCTATAATAACTTAAGTCACAAATATGAGAAACTAGAGGGAAAACAATTTTCTATTTCTGAAGCTGAATACTTTGTATTTCACTCTCCATATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGGTGTTCAATGACTTCTTGAAAAATTCCAGTTCTGTGGATGAGGTTGCCAAAGAAAAGCTGAAACCTTTTGCAACATTATCTAATGATGAGAGCTATCAAAGCCGGGATCTAGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCAATTCGATGCAAAGGTGCAACCAAGCACCTTGATACCAAAACAAGTTGGCAACATGTACACCGCATCTCTTTATGCAGCATTTATTTCACTTATTCACAACAAACATAGCACATTGGATGGTAAGAGGGTAATATTGTTCTCATATGGAAGTGGCTTAGCTTCCACAATGTTCTCCTTGCAACTACGTGAAGGTCAACATCCATTTAGCTTGTCAAACATTGTCAAAGTCATGGATGTTACTGAAAAATTGAAGTCAAGGCATGAGTTTCCGCCAGAGAAATTTGTTGAAACCATGAATCTAATGGAACACAGGTATGGTGCCAAGGAGTATGTAACAAGCAAGGACACCAGCCTTTTATCTCCAGGCACATTCTATCTCATTGAAGTTTCCATGTATAGAAGATTCTATGCAAAGAAAATCAGTGAAAATGATTTGATCACTAATGGTCATTGA 1380 0.4065 MAKNVGILAIDIYFPSTCIQQEVLEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTVVSSLLEKYKIDPIKIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMAHAYDFYKPNLASEYPIVDGKLSQTCYLMALDSCYNNLSHKYEKLEGKQFSISEAEYFVFHSPYNKLVQKSFARLVFNDFLKNSSSVDEVAKEKLKPFATLSNDESYQSRDLEKASQQVAKPQFDAKVQPSTLIPKQVGNMYTASLYAAFISLIHNKHSTLDGKRVILFSYGSGLASTMFSLQLREGQHPFSLSNIVKVMDVTEKLKSRHEFPPEKFVETMNLMEHRYGAKEYVTSKDTSLLSPGTFYLIEVSMYRRFYAKKISENDLITNGH 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04395 459 NCBIfam hydroxymethylglutaryl-CoA synthase 2 448 IPR010122 GO:0004421|GO:0008299
Spst3g04395 459 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 448 - -
Spst3g04395 459 Gene3D - 1 449 IPR016039 GO:0016746
Spst3g04395 459 CDD init_cond_enzymes 4 368 - -
Spst3g04395 459 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 449 - -
Spst3g04395 459 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Spst3g04395 459 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Spst3g04395 459 SUPERFAMILY Thiolase-like 175 446 IPR016039 GO:0016746
Spst3g04395 459 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Spst3g04395 459 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 448 IPR013746 GO:0004421|GO:0006084|GO:0010142
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04395 Spst-Chr3 95556417 95560826 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04395 K01641 - gmx:100780554 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04395 3 95556417 95560826 Spst3g04395 3 95556417 95560826 ECH
Spst3g04395 3 95556417 95560826 Spst2g00350 2 2740599 2745959 PCT