Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04392 ATGAATAGGAGGGAAAGGGAGAGTGAGATACCAGAAGAGAGTGCAGAGATCTACCTTATTCTCTTACTCTTCCTTCTCTCTCACTCTTTCACTGTCAGACACATGGGCTTCCCAGCCAAGGGTGCCTCAGCTGACCACCCGATCAAGTTCCTCATCTACGGCCGCACGGGCTGGATTGGTGGCCTCCTCGGCATCCTCTGTCAGGCCCAAGGCATCCCCTTCCAGTACGCCTCGGGCCGTCTCGAGAACCGGGCCTCCCTCGAAAGGGACATAGCCGAGGTCAAGCCCACCCACGTCTTCAGCGCCGCCGGTGTCACGGGCCGGCCCAACGTCGACTGGTGCGAGTCTCATAAGGTGGAGACCATCCGAACCAACGTCGTTGGAACCCTCACTCTCGCCGACGTCTGCCGCCAACACGGCCTCCTCCTTCTCAACTACGCCACCGGTTGCATCTTCGAGTACGATTCCGATCATCCTCTCGGATCTGGAATCGGCTTCAAAGAACTGGACACTCCCAATTTCACCGGTTCCTTTTACTCTAAGACTAAAGCCATGGTAGAGGATCTGCTTAAGAACTACGATAATGTGTGTACCTTGCGAGTGAGGATGCCTATCTCGTCTGATTTGTCGAATCCGCGCAATTTCATCACGAAGATCACTCGATACGAGAAGGTTGTGGATATTCCGAATTCCATGACTATATTGGATGAACTTCTTCCCATCTCAATTGAGATGGCGAAGAGGAACCTGACTGGGATCTGGAACTTCACGAACCCTGGAGTGGTTAGTCACAATGAAATTCTAGAGATGTACAGAGAGTATGTTGACCCCAACTTCACCTGGAAGAACTTCACTCTTGAGGAACAGGCTAAGGTGATTGTTGCCCCCAGGAGCAACAATGAGCTTGATGCCACGAAACTGAAGACCGAATTTCCAGAACTGTTATCTATCAAGGATTCACTCATTAAGTATGTCTTCAAGCCCAACCAGAAGCTTAAAGCATAA 1005 0.5124 MNRRERESEIPEESAEIYLILLLFLLSHSFTVRHMGFPAKGASADHPIKFLIYGRTGWIGGLLGILCQAQGIPFQYASGRLENRASLERDIAEVKPTHVFSAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRQHGLLLLNYATGCIFEYDSDHPLGSGIGFKELDTPNFTGSFYSKTKAMVEDLLKNYDNVCTLRVRMPISSDLSNPRNFITKITRYEKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYREYVDPNFTWKNFTLEEQAKVIVAPRSNNELDATKLKTEFPELLSIKDSLIKYVFKPNQKLKA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04392 334 CDD dTDP_HR_like_SDR_e 49 321 - -
Spst3g04392 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 319 IPR036291 -
Spst3g04392 334 Gene3D - 40 334 - -
Spst3g04392 334 PANTHER DTDP-4-DEHYDRORHAMNOSE REDUCTASE 48 331 IPR005913 -
Spst3g04392 334 Pfam NAD dependent epimerase/dehydratase family 78 214 IPR001509 -
Spst3g04392 334 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 39 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04392 Spst-Chr3 95545829 95546910 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04392 K12451 - gmx:100781643 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04392 3 95545829 95546910 Spst3g04392 3 95545829 95546910 ECH
Spst3g04392 3 95545829 95546910 Spst2g00351 2 2749027 2750137 PCT