Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04389 ATGTGCTATGCTACCATGGCAGTTGGCATGGTGGAGTTATGGTTAAGCAAGAGGTTGTGGGTTGAGCAATACAAAATAGAGGCTATCTGTTTCAAATCTTGGAAGTGTATAAGAAGGGGTGGAAGAGAGGGCTATTGGGGCCGGTGGTGGAGCCAGAGGGAGGAAACAGAGGGGTCCACGATCCACGGTGAGCGTGCACCAAGACCGAGGCATCTCACGCCACTTCAAAATAAAACAACACAAACGGAAAAAACAGCTGCAACCTTTTACTGGGTTTTTTCCCGGGAAAATATTAACAGCTTCGCCAGCACTTCATTCCCAGATCGCGAAACCGGAATCGGCATGGACCGCTCCTCCGCCCGCCTCAATGTTCCTCCGCCGGTCACCTCCGGAGGCTCCGCGGAGGCGACTCTCCGCCACGTGGACCGCCTCATAAACTCCAACCACTACACGTCGCCTTCCAGGACAATCTACTCCGACCGCTTCATTCCCAGTAGATCTGCCTCGAAATTCGCGCTCTTCGACATAGCCACGCTCCCCGAGGGCCGGGACGACAGCTCCAGCGCCTATACCACGCTCCTCCGCACAGCCCTCTTCGGCCCCGACGCTGCCGGCCTTGCGCTACCGCTCACGCAGCAGAAAACGGCTTCCCTGACCATGACGCTCCCCAGCCGGAATATTTTCCGGTACAAGACCGAAACGCGCCAGTCCATGCACTCGCTCTCGCCGTTCATGTGCGACGATTCCGTGCCCGGAGTTAATCACGGCCCGGTCAAGGCTCCCAGGAAGGTTCCGAGGTCGCCTTTTAAGGTTCTGGATGCGCCTGCGCTACAAGATGATTTTTACCTGAATCTAGTGGATTGGTCTTCGCATAATGTGTTGGCTGTTGGTCTGGGTAACTGTGTTTATCTCTGGAATGCTTGTAGCAGCAAGGTTACTAAATTATGTGACTTGGGGATTGATGACCTCGTTTGTTCGGTAGGCTGGGCTCAACGTGGTACACACCTTGCTGTTGGAACTAGCAATGGTAAAGTTCAGATTTGGGATGCATCTCGTTGCAAGAAGATAAGGTCTATGGAGGGTCATCGGTTACGTGTTGGAGCCTTAGCCTGGAGTTCATCTCTTTTGTCTTCTGGTGGCAGGGATAAGAATATTTATCAAAGAGATATCCGTGCACAAGAAGATTTTGTCAGTAAACTGTCAGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTTTGGAATCAACACTCAACTCAACCTGTCCTGAAGTACTGTGAGCACACAGCAGCTGTCAAGGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGATCGATGCATACGATTCTGGAATACAACCACAAACTCACACTTAAGCTGCATGGACACTGGAAGTCAGGTTTGCAATCTTGTCTGGTCTAAAAATGTCAATGAACTAGTAAGCACACATGGCTACTCCCAGAACCAGATAATTGTTTGGAGATACCCCACCATGTCAAAGTTGGCCACTCTTACTGGCCATACATACAGAGTTCTTTATCTTGCCATTTCTCCAGATGGACAGACTATTGTAACTGGAGCTGGAGATGAAACACTTAGGTTCTGGAATGTATTCCCTTCCCCTAAATCACAGAATACTGACAGTGAAATCGGAGCATCATCTCTTGGAAGAACCATTATTAGGTGA 1764 0.5006 MCYATMAVGMVELWLSKRLWVEQYKIEAICFKSWKCIRRGGREGYWGRWWSQREETEGSTIHGERAPRPRHLTPLQNKTTQTEKTAATFYWVFSRENINSFASTSFPDRETGIGMDRSSARLNVPPPVTSGGSAEATLRHVDRLINSNHYTSPSRTIYSDRFIPSRSASKFALFDIATLPEGRDDSSSAYTTLLRTALFGPDAAGLALPLTQQKTASLTMTLPSRNIFRYKTETRQSMHSLSPFMCDDSVPGVNHGPVKAPRKVPRSPFKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDLVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04389 587 Gene3D - 258 567 IPR015943 GO:0005515
Spst3g04389 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 432 - -
Spst3g04389 587 Pfam WD domain, G-beta repeat 437 477 IPR001680 GO:0005515
Spst3g04389 587 Pfam WD domain, G-beta repeat 397 432 IPR001680 GO:0005515
Spst3g04389 587 Pfam WD domain, G-beta repeat 526 562 IPR001680 GO:0005515
Spst3g04389 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 358 IPR001680 GO:0005515
Spst3g04389 587 MobiDBLite consensus disorder prediction 57 71 - -
Spst3g04389 587 SMART WD40_4 393 432 IPR001680 GO:0005515
Spst3g04389 587 SMART WD40_4 435 477 IPR001680 GO:0005515
Spst3g04389 587 SMART WD40_4 523 562 IPR001680 GO:0005515
Spst3g04389 587 SMART WD40_4 265 306 IPR001680 GO:0005515
Spst3g04389 587 SMART WD40_4 309 349 IPR001680 GO:0005515
Spst3g04389 587 SMART WD40_4 352 389 IPR001680 GO:0005515
Spst3g04389 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 563 - -
Spst3g04389 587 FunFam FIZZY-related 2 isoform 1 265 565 - -
Spst3g04389 587 ProSitePatterns Trp-Asp (WD) repeats signature. 549 563 IPR019775 -
Spst3g04389 587 SUPERFAMILY WD40 repeat-like 278 563 IPR036322 GO:0005515
Spst3g04389 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 441 IPR001680 GO:0005515
Spst3g04389 587 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 136 582 IPR033010 GO:0010997|GO:0097027|GO:1904668
Spst3g04389 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 563 IPR001680 GO:0005515
Spst3g04389 587 MobiDBLite consensus disorder prediction 57 79 - -
Spst3g04389 587 Pfam Anaphase-promoting complex subunit 4 WD40 domain 320 373 IPR024977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04389 Spst-Chr3 95500960 95509254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04389 394 563 Miscellaneous Gene Families AT5G08390 22.807 1.10e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04389 K03364 - gmx:100780928 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04389 3 95500960 95509254 Spst3g04389 3 95500960 95509254 ECH
Spst3g04389 3 95500960 95509254 Spst2g00356 2 2807181 2813137 PCT