Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00356 ATGTCCTCTTCTCAGCACAACCACGTCAAACGAATGTTAAATTCCGATCGGTTTAAGTCACCTTCCAAAACAATCTACTCCGACCGCTTCATACCCAGCAGATCCGCTTCCAAATTTGCTCTCTTTAACCTATCGTCGTCCAAGGAAGATGGTTGCAGTTGCAGTCCCTACGGCAACGCGCTGCGGAGGGCATTATTCGGACCTGCCACACCCGACAAATTCGAAAGCCCTAATATATTTCATTTCAAATCGGAGACTCGACAGTCCATGCACTCTCTTTCTCACACTCCTTTTACTTCCCACGATGATCATCTCCATGGCTATGATTACAATCATAAACCTTTCAAGCGCGCTCGCAAGATTCCTCCCTCCTCATTTAAGGTTCTGGATGCACCGGCTCTGCAGGACGATTTTTATCTGAATCTCGTGGATTGGTCCTCTAGCAATGTCTTGGCTGTGGCTCTGGAAAACTCTGTTTATTTGTGGAATGCTTCTAGCAGCAAGGTAACTAAGCTATGCGATTTGGGGGTTGGCGACTCTGTTTGTTCAGTTGGTTGGGCTCCGCTTGGTACTTACCTGGCTGTTGGATCAAACAGTGGAAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGTCAATAAGAACTATGGAGGGTCATCGATTACGTGTTGGGACCTTGGCCTGGAGTTCATCCCTTTTGTCTTCTGGAAGCCGAGATAAAAACATTTACCAACGAGATATTCGTGTACAGGAGGATTTTGTCAGTAAACTGTCTGGGCACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGCGAGTTAGCATCGGGTGGAAATGACAATAAGTTACTAGTTTGGAATCAAAATTCAACCCAGCCTATCTTGAAGTTCTGTGACCATACAGCAGCGGTTAAAGCTATTACGTGGTCTCCTCATACAAATGGACTGCTAGCATCTGGAGGAGGTACTGCTGACCGAAGCATTCGATTCTGGAGTACAACCACAAACTCCCAGTTAAACTGCATTGACACTGGAAGTCAGGTTTGTAATCTTGTCTGGTCTAAAAATGTGAATGAATTGGTAAGCACACACGGCTACTCCCAGAACCAGATAATGGTTTGGAAATATCCCACCATGTCAAAGCTAGCAACTCTTACAGGCCATACTTACAGAGTTCTTTATCTTGCTATTTCTCCAGATGGGCAGACTATTGTCACTGGAGCTGGGGATGAAACTCTTAGATTTTGGAACGTATTCCCTTCGCAGAAATCACAGAATACGGAGAGTGAAATTGGAGCATCCTCTTTTGGAAGAACTATCATCAGGTGA 1335 0.4509 MSSSQHNHVKRMLNSDRFKSPSKTIYSDRFIPSRSASKFALFNLSSSKEDGCSCSPYGNALRRALFGPATPDKFESPNIFHFKSETRQSMHSLSHTPFTSHDDHLHGYDYNHKPFKRARKIPPSSFKVLDAPALQDDFYLNLVDWSSSNVLAVALENSVYLWNASSSKVTKLCDLGVGDSVCSVGWAPLGTYLAVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGTLAWSSSLLSSGSRDKNIYQRDIRVQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLLVWNQNSTQPILKFCDHTAAVKAITWSPHTNGLLASGGGTADRSIRFWSTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIMVWKYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSQKSQNTESEIGASSFGRTIIR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00356 444 Pfam WD domain, G-beta repeat 294 334 IPR001680 GO:0005515
Spst2g00356 444 Pfam WD domain, G-beta repeat 383 419 IPR001680 GO:0005515
Spst2g00356 444 Pfam WD domain, G-beta repeat 254 289 IPR001680 GO:0005515
Spst2g00356 444 SUPERFAMILY WD40 repeat-like 135 429 IPR036322 GO:0005515
Spst2g00356 444 Pfam Anaphase-promoting complex subunit 4 WD40 domain 150 230 IPR024977 -
Spst2g00356 444 ProSitePatterns Trp-Asp (WD) repeats signature. 406 420 IPR019775 -
Spst2g00356 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 215 IPR001680 GO:0005515
Spst2g00356 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 289 - -
Spst2g00356 444 SMART WD40_4 122 163 IPR001680 GO:0005515
Spst2g00356 444 SMART WD40_4 166 206 IPR001680 GO:0005515
Spst2g00356 444 SMART WD40_4 292 334 IPR001680 GO:0005515
Spst2g00356 444 SMART WD40_4 337 377 IPR001680 GO:0005515
Spst2g00356 444 SMART WD40_4 380 419 IPR001680 GO:0005515
Spst2g00356 444 SMART WD40_4 209 246 IPR001680 GO:0005515
Spst2g00356 444 SMART WD40_4 250 289 IPR001680 GO:0005515
Spst2g00356 444 Gene3D - 115 423 IPR015943 GO:0005515
Spst2g00356 444 FunFam FIZZY-related 2 isoform 1 122 422 - -
Spst2g00356 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 428 IPR001680 GO:0005515
Spst2g00356 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 420 - -
Spst2g00356 444 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 14 439 IPR033010 GO:0010997|GO:0097027|GO:1904668
Spst2g00356 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 298 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00356 Spst-Chr2 2807181 2813137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00356 244 420 Miscellaneous Gene Families AT5G08390 25.281 2.61e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00356 K03364 - gmx:100785726 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00356 2 2807181 2813137 Spst2g00356 2 2807181 2813137 ECH
Spst3g04389 3 95500960 95509254 Spst2g00356 2 2807181 2813137 PCT