Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04221 ATGAATGATCACAAAGGAAGAGAAGGAGAAAGTGTTGTTGGTCGGAAGCGAATCAAGGATAAGAAGCAGCAGCAACAACAACCCACTCCTTCCACTGCAAGGCCAAACAACTCTCACCGTCGCTCTCTCTCCCTCCCTAACACTCAACACGAGGAATCTGAAACAGATATTGAAGGATCGGATGTTAGTGTCTCAGAAGGGGATGACACATCTTGGATCTCATGGTTTTGCAATTTGAGAGGAAATGAATTCTTCTGTGAAGTTGATGATGATTTTGTACAAGATGATTTCAATCTCTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCACTTGATTTAATTTTGGATGTTGAGACCTCCCACGGAGACATGTTCACAGAGGAACAACATGAGTTAATTGAATCTGCAGCAGAGATGCTTTATGGTCTGATTCATGCCCGGTTCATTTTGACCAGCAAAGGAATGGCTGCAATGCTTCACAAGTTCAAAAACTTGGACTTTGGCAGATGTCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGCCAGTCAGATATTCCTAGGTCAAGTAATGTGAAAATATATTGCCCCAAGTGTGAAGACGTTTACTACCCAAAGTCCAAGTATCAAGACATTGATGGAGCTTATTTTGGAGTTACATTTCCTCACCTCTTTCTGATGACTTACGGGAATCTGAAGCCACAAAAGCCATCACAGAACTATGTACCAAGAGTTTTTGGTTTCAAAGTTCACAAGTCCTGA 774 0.4212 MNDHKGREGESVVGRKRIKDKKQQQQQPTPSTARPNNSHRRSLSLPNTQHEESETDIEGSDVSVSEGDDTSWISWFCNLRGNEFFCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVETSHGDMFTEEQHELIESAAEMLYGLIHARFILTSKGMAAMLHKFKNLDFGRCPRVYCSGQPCLPVGQSDIPRSSNVKIYCPKCEDVYYPKSKYQDIDGAYFGVTFPHLFLMTYGNLKPQKPSQNYVPRVFGFKVHKS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04221 257 Pfam Casein kinase II regulatory subunit 71 253 IPR000704 GO:0005956|GO:0019887
Spst3g04221 257 FunFam Casein kinase II subunit beta 64 168 - -
Spst3g04221 257 Gene3D - 169 242 - -
Spst3g04221 257 SMART CK_II_beta_2 71 253 IPR000704 GO:0005956|GO:0019887
Spst3g04221 257 MobiDBLite consensus disorder prediction 24 44 - -
Spst3g04221 257 SUPERFAMILY Casein kinase II beta subunit 69 256 IPR035991 GO:0005956|GO:0019887
Spst3g04221 257 ProSitePatterns Casein kinase II regulatory subunit signature. 172 203 IPR000704 GO:0005956|GO:0019887
Spst3g04221 257 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 64 168 IPR016149 GO:0005956|GO:0019887
Spst3g04221 257 MobiDBLite consensus disorder prediction 1 65 - -
Spst3g04221 257 PRINTS Casein kinase II regulatory subunit family signature 143 164 IPR000704 GO:0005956|GO:0019887
Spst3g04221 257 PRINTS Casein kinase II regulatory subunit family signature 88 102 IPR000704 GO:0005956|GO:0019887
Spst3g04221 257 PRINTS Casein kinase II regulatory subunit family signature 71 87 IPR000704 GO:0005956|GO:0019887
Spst3g04221 257 PRINTS Casein kinase II regulatory subunit family signature 168 189 IPR000704 GO:0005956|GO:0019887
Spst3g04221 257 PRINTS Casein kinase II regulatory subunit family signature 190 211 IPR000704 GO:0005956|GO:0019887
Spst3g04221 257 PRINTS Casein kinase II regulatory subunit family signature 217 234 IPR000704 GO:0005956|GO:0019887
Spst3g04221 257 PANTHER CASEIN KINASE II SUBUNIT BETA 50 256 IPR000704 GO:0005956|GO:0019887
Spst3g04221 257 MobiDBLite consensus disorder prediction 1 23 - -
Spst3g04221 257 FunFam Casein kinase II subunit beta 169 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04221 Spst-Chr3 93639978 93643075 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04221 K03115 - gmx:100789357 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04221 3 93639978 93643075 Spst3g04219 3 93623130 93625913 PCT