Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04219 ATGTACAAAGAACGAGGAGGTGTTTCCGTCACTGTTTCTGCTTCTGCTTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTCCTCGACAAGCACCTCGAACGATCCTCTCCGTCCACTTCACGGCCTGTCAACGCCACCTCCAAAAATTCCACCCTCCAAGCGGAGGAATCTGAAACGGAGAGTGAAGAGTCCGATGTTAGTGGTTCTGATGGGGATGACACCTCTTGGATCTCGTGGTTCTGCAATCTCAGGGGAAACGAGTTCTTTTGCGAGGTTGATGATGATTACATCCAGGATGATTTTAACCTCTGTGGATTGAGCAGTCAAGTGCCCTACTATGATTATGCCCTTGATTTGATTCTCGATGTCGAATCATCCCATGGTGACATGTTTACGGAGGAACAGAATGAGTTGATTGAATCAGCTGCGGAAATGCTTTACGGTTTGATTCATGCCAGATATGTGTTGACCAGTAAAGGAATGGCTGCCATGCTTGACAAATACAAGAACTATGATTTTGGTAGATGCCCAAGAGTTTACTGCTCTGGACAGCCCTGCCTTCCAGTTGGTCAATCAGACATTCCTAGGGCAAGTACTGTGAAAATATACTGCCCTAGATGTGAAGATCTATACTATCCTCGCTCCAAGTATCAAGGAAACATTGATGGAGCATATTTTGGAACAACATTTCCACACCTCTTCTTGATGACATATGGACAACTGAAGCCACAGAAACCATCACAAGGCTATGTTCCAAGAGTTTTTGGGTTCAAACTTCCCTACTTTTATCTCGTTTATTCCATTTGCACCATTTATGTAGTTTTTGAATTTGTGGATATGATCCCAAAGGATTCATACATTTTACTGGTTTTAAAGTTAGCTTGCTTGGATGTTAAACTCACGTACAACATTAATATTGATTATATGGAAAATATGAATATGTACAATATGACCGACTTCAAGTCAGTTTGTTGTGTTCTGAATATATGGTTACTGACTTCAGTGACTTGTGAAACATCGCCCTATGCGTTCGCACCTGTTAGCATACATAAATACTTCCTTGATGGAGAATTTCAACTGTTGAAAAATGTGAGCTATTATCTATTCACTGGCGTATATAGCTTTTTCTACAACTTCCATTTTGTTCAATCCCTCGGTTCAGTTCTACAACTTGCTACACTCCAGACTGACGTCGTGCCCGCATAA 1209 0.4202 MYKERGGVSVTVSASASKSEDRKRINDVLDKHLERSSPSTSRPVNATSKNSTLQAEESETESEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRASTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKLPYFYLVYSICTIYVVFEFVDMIPKDSYILLVLKLACLDVKLTYNINIDYMENMNMYNMTDFKSVCCVLNIWLLTSVTCETSPYAFAPVSIHKYFLDGEFQLLKNVSYYLFTGVYSFFYNFHFVQSLGSVLQLATLQTDVVPA 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04219 402 SUPERFAMILY Casein kinase II beta subunit 74 262 IPR035991 GO:0005956|GO:0019887
Spst3g04219 402 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 69 173 IPR016149 GO:0005956|GO:0019887
Spst3g04219 402 MobiDBLite consensus disorder prediction 38 55 - -
Spst3g04219 402 Pfam Casein kinase II regulatory subunit 76 259 IPR000704 GO:0005956|GO:0019887
Spst3g04219 402 PANTHER CASEIN KINASE II SUBUNIT BETA 55 260 IPR000704 GO:0005956|GO:0019887
Spst3g04219 402 SMART CK_II_beta_2 76 259 IPR000704 GO:0005956|GO:0019887
Spst3g04219 402 FunFam Casein kinase II subunit beta 69 173 - -
Spst3g04219 402 Gene3D - 174 248 - -
Spst3g04219 402 MobiDBLite consensus disorder prediction 17 37 - -
Spst3g04219 402 ProSitePatterns Casein kinase II regulatory subunit signature. 177 208 IPR000704 GO:0005956|GO:0019887
Spst3g04219 402 PRINTS Casein kinase II regulatory subunit family signature 195 216 IPR000704 GO:0005956|GO:0019887
Spst3g04219 402 PRINTS Casein kinase II regulatory subunit family signature 223 240 IPR000704 GO:0005956|GO:0019887
Spst3g04219 402 PRINTS Casein kinase II regulatory subunit family signature 173 194 IPR000704 GO:0005956|GO:0019887
Spst3g04219 402 PRINTS Casein kinase II regulatory subunit family signature 93 107 IPR000704 GO:0005956|GO:0019887
Spst3g04219 402 PRINTS Casein kinase II regulatory subunit family signature 76 92 IPR000704 GO:0005956|GO:0019887
Spst3g04219 402 PRINTS Casein kinase II regulatory subunit family signature 148 169 IPR000704 GO:0005956|GO:0019887
Spst3g04219 402 MobiDBLite consensus disorder prediction 1 72 - -
Spst3g04219 402 FunFam Casein kinase II subunit beta 174 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04219 Spst-Chr3 93623130 93625913 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04219 K03115 - gmx:100793573 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04219 3 93623130 93625913 Spst3g04219 3 93623130 93625913 ECH
Spst3g04219 3 93623130 93625913 Spst3g04219 3 93623130 93625913 PCT
Spst3g04221 3 93639978 93643075 Spst3g04219 3 93623130 93625913 PCT