Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04056 ATGGACGTGGGCGGAGGATCAATTAGAGCCGCCATATCGCGGTGGGAGTTGGCGGTGTGGCGGCAGTACCAGCATGTGCTGGACAAGTGGACGCCGCACGTGGGACGGCGGTGGGTGGGGTTATTGGTGGTGGCCCTGGTGTACGCGCTGCGTGTGTACTTCGTGGAAGGGTTCTACTTAGTGTCGTACGGCTTGGGAATATACATCCTCAACCTTCTGATCGGGTTCCTCTCCCCTCAGGTGGATCCCGAGATTCTAGACGCTGAGGGCCCCAGCCTCCCCACCTCCGCTAACGACGAGTTTCGTCCCTTCGTTCGCCGCCTCCCCGAGTTCAAGTTCTGGTACTCAATCACAAAGGCGTTTTGCGTTGCATTTGTGATGACTTTCTTTAGTGCGTTTGATGTTCCAGTGTTCTGGCCAATACTCCTCTTCTACTGGGTGGTCCTATTCACACTTACAATGAGGAGACAGATATCTCACATGATTAAATACAAATATTTACCCTTCTCATCTGGAAAACAGCGCTATGATGGAAAGAGAGCATCACCTGAAAGCACAAGCCTTTCAGAGGACTGA 576 0.5278 MDVGGGSIRAAISRWELAVWRQYQHVLDKWTPHVGRRWVGLLVVALVYALRVYFVEGFYLVSYGLGIYILNLLIGFLSPQVDPEILDAEGPSLPTSANDEFRPFVRRLPEFKFWYSITKAFCVAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYLPFSSGKQRYDGKRASPESTSLSED 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04056 191 PANTHER PROTEIN RER1 10 182 IPR004932 GO:0016020
Spst3g04056 191 Pfam Rer1 family 18 176 IPR004932 GO:0016020
Spst3g04056 191 PIRSF AtER_Rer1p 2 187 IPR004932 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04056 Spst-Chr3 91495972 91498044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04056 1 182 Miscellaneous Gene Families AT4G39220 67.204 2.68e-92 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04056 - - gmx:100804538 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04056 3 91495972 91498044 Spst3g04056 3 91495972 91498044 ECH
Spst9g00144 9 1210566 1212903 Spst3g04056 3 91495972 91498044 ECH
Spst3g04056 3 91495972 91498044 Spst3g04056 3 91495972 91498044 PCT