Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03906 ATGGAACAGGGTCGCAGAGAAGACCAGAAGACGACGTTAAACAAATATGCCTTTGCTTGTGCTGTAGTTGCTTCAATGGTTTCCATCATATCTGGTTATGATACTGGTGTTATGAGTGGAGCAATGATATTCATCAAAGATGATATTGGTATCAGCGATACCCAACAAGAGGTTCTGGCAGGAATCTTGAACCTATGTGCATTGGTAGGATCCTTGGCCGCAGGAAGAACCTCTGATTACATTGGTCGTCGCTACACAATTTTGTTAGCCTCCGTCCTCTTCATGCTGGGTGCAGTTCTGATGGGGTATGGCCCAAACTACGCAATATTGATGCTTGGAAGGTGTGTTGGTGGTGTGGGTGTGGGATTTGCTCTTATGATAGCACCAGTTTACTCAGCAGAGATTTCCTCTGCATCATCCAGGGGTTTTCTGACCTCTTTGCCCGAGCTTTGTATCGGCATTGGCATCTTACTTGGCTACATATCAAACTACTTATTGGGAAAATTGACCCTGAAACTTGGATGGAGGATGATGCTTGGTGTTGCGGCACTTCCGTCACTTGCTTTGGCTTTGGGCATTCTAGCAATGCCAGAGTCGCCAAGGTGGTTAGTGATGCAGGGTCGTTTGGAAGGTGCGAAGAGGGTGCTATTGAAAGTTTCAAACAGCACAGAAGAGGCTGAACTTCGTTTCAGGGAAATAAAAGTTGCTGTAGGGTTTGATGAGAATTGTGGCATTGGTGAAAATGTGAAGGTTCCTCAGAAGAAGTCACAAGGTGAAGGGGTTTGGAAAGAGTTGCTTGTGAGGCCAACACCTGAAGTTCGTTGGATGCTGATTGCAGCAATTGGGATTCATTTTTTCGAGCATGCAACGGGCATAGAAGCTGTGATGTTGTATAGCCCCAGAATCTTTAAGAAAGCTGGTGTGACAAGTAAGGATAAGCTCTTGCTGGCAACTGTTGGAATTGGCCTCACAAAGATCACTTTCTTGGTCTTGGCTTTATTTTTGCTTGACAAAGTTGGCAGAAGGCGCCTCTTGCAAGTCAGCACTGGGGGAATGATTTGCGGCCTGGCACTTTTGGGTTTTAGTTTGACCATGGTTGACCATTCAAGTGAAAAGCTCTTGTGGGCATTGAGCCTAAGCATCGTGGCCACATATGCTTATGTTGCCTTCTTTAACATTGGGCTTGGGCCTGTCACGTGGGTCTACGGGTCGGAGATATTCCCTTTGAAGTTGAGGGCGCAAGGGGCGAGTATAGGAGTTGCAGTGAATAGGACCATGAATGCTGTGGTTTCCATGAGCTTTATTTCAGTCTACAAATCAATCACCATTGGTGGGAGCTTTTTCATGTTTGCTGGAGTATCTGTTCTAGCTTGGCTCTTCTTTTACTTTTTCCTTCCTGAAACCAAAGGCGTGCCCTTGGAAGACATGGAAATGCTTTTTACCAAAAAATCCACCGCTCAAAATGTTGCCATCAAAACTGATCCATTCTGTAGTAGCATTTTGGGCTAG 1509 0.4559 MEQGRREDQKTTLNKYAFACAVVASMVSIISGYDTGVMSGAMIFIKDDIGISDTQQEVLAGILNLCALVGSLAAGRTSDYIGRRYTILLASVLFMLGAVLMGYGPNYAILMLGRCVGGVGVGFALMIAPVYSAEISSASSRGFLTSLPELCIGIGILLGYISNYLLGKLTLKLGWRMMLGVAALPSLALALGILAMPESPRWLVMQGRLEGAKRVLLKVSNSTEEAELRFREIKVAVGFDENCGIGENVKVPQKKSQGEGVWKELLVRPTPEVRWMLIAAIGIHFFEHATGIEAVMLYSPRIFKKAGVTSKDKLLLATVGIGLTKITFLVLALFLLDKVGRRRLLQVSTGGMICGLALLGFSLTMVDHSSEKLLWALSLSIVATYAYVAFFNIGLGPVTWVYGSEIFPLKLRAQGASIGVAVNRTMNAVVSMSFISVYKSITIGGSFFMFAGVSVLAWLFFYFFLPETKGVPLEDMEMLFTKKSTAQNVAIKTDPFCSSILG 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03906 502 Pfam Sugar (and other) transporter 20 480 IPR005828 GO:0016020|GO:0022857|GO:0055085
Spst3g03906 502 Gene3D MFS general substrate transporter like domains 9 484 IPR036259 -
Spst3g03906 502 NCBIfam sugar porter family MFS transporter 13 475 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03906 502 SUPERFAMILY MFS general substrate transporter 7 477 IPR036259 -
Spst3g03906 502 ProSitePatterns Sugar transport proteins signature 2. 116 141 IPR005829 GO:0016020|GO:0022857|GO:0055085
Spst3g03906 502 ProSiteProfiles Major facilitator superfamily (MFS) profile. 20 469 IPR020846 GO:0022857
Spst3g03906 502 PRINTS Sugar transporter signature 28 38 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03906 502 PRINTS Sugar transporter signature 111 130 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03906 502 PRINTS Sugar transporter signature 287 297 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03906 502 PRINTS Sugar transporter signature 381 402 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03906 502 PRINTS Sugar transporter signature 404 416 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03906 502 FunFam probable polyol transporter 4 10 483 - -
Spst3g03906 502 ProSitePatterns Sugar transport proteins signature 1. 74 91 IPR005829 GO:0016020|GO:0022857|GO:0055085
Spst3g03906 502 ProSitePatterns Sugar transport proteins signature 1. 332 349 IPR005829 GO:0016020|GO:0022857|GO:0055085
Spst3g03906 502 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 10 484 IPR045262 GO:0015144
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03906 Spst-Chr3 89124074 89126522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03906 7 480 Organic Solute Cotransporters AT2G18480 71.639 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03906 - - var:108328789 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03906 3 89124074 89126522 Spst2g00790 2 6670485 6671855 ECH
Spst3g03906 3 89124074 89126522 Spst3g03906 3 89124074 89126522 ECH
Spst2g00787 2 6654773 6656560 Spst3g03906 3 89124074 89126522 PCT
Spst3g03906 3 89124074 89126522 Spst3g03906 3 89124074 89126522 PCT