Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03860 ATGGCCAATCGTGGAAGCCTCGCTGTCTCTGAAACACAACCTATTTTCAGTGTTCTCTTCCCTTCATATAACTTCTCTCTCTGTCCTTTCTCTTCGTCCCGTTCGCTTCCACTAGCTCTCGAAAACGGTGATCGTGTTGGTTCACTGAAAAAAAAAATGAGGAATTCCCTCACAAGGAGTAGGAAAGGCTGCAGCAAGGTCATGTCGATAGAAATCGAGGATATCCGTGATGCTGAAGAGTCCAAAGCCGTTGATGAGTTCCGTCAGGCTCTTGTCTTGGACGAACTACTTCCAGAGAAGCACGATGATTATCACATGATGCTCAGGTTCCTTAAGGCCAGGAAATTTGACGTTGAGAAATCTAAGCAAATGTGGTCTGACATGCTTCAATGGAGGAAGGAATTTGGCGCTGACACCATCGGCGAGGATTTTGAATTCAAGGAACTCGATGAAGTGTTGCAATATTATCCTCATGGACATCATGGAGTTGATAAGGATGGGCGACCAGTGTACATTGAGAGATTGGGCCAAGTGGATGCCACCAAGTTGATGCAAGTCACAACCATGGACCGCTACATCAAATACCATGTCAAGGAGTTCGAGAGGACATTTGATGTGAAATTCGCAGCTTGCTCCATTGCTGCAAAGAAGCACATCGATCAAAGTACAACCATCCTTGATGTGCAAGGAGTGGGCCTAAAGAACTTCAACAAGCATGCCAGGGAGCTCATCACCCGCCTTCAAAAGATTGACGGCGACAACTATCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGCTCTGGATTCAGAATGTTGTGGAGCACTGTTAAATCCTTCCTTGACCCAAAGACCACATCCAAAATCCATGTTCTTGGCAACAAGTACCAGAGCAAACTGCTTGAAATGATTGATGAGAGTGAGTTGCCAGAGTTTTTGGGAGGCACCTGTACTTGTGCCGATCAAGGAGGCTGCATGCGCTCTGATAAGGGCCCTTGGAAGGATGAGGAAATACTGAAGATGGTTCAAAATGGTGAGCACAAATGTTCAAGGAGATGTGAGGTTCCCGTCATTGAAGAGAGGACAACTTCTGAGGAACACGAGACTGTCAAGTCGGAGGCAAAACTCACCACACAAAAGTCTTCTGCCATTGCTGAGGTCGCTTCTTCCAAGGCTTACAAGTACGAGGACTTCGTCCCCGCAGCTGAAAAAACTGCTTGGAAAAAGGTGGATAAGAATGACAAATTTGCTGTATCCAAAGGTAGAATTGAAATTTCTTGGTTACCTCTATTTTATAGGAAGCATATTCCTAATGATAAAGACTTTTTAAAGTCATCTTGTGTGGTGCCTATGCCAAATTACAACACATGA 1374 0.4505 MANRGSLAVSETQPIFSVLFPSYNFSLCPFSSSRSLPLALENGDRVGSLKKKMRNSLTRSRKGCSKVMSIEIEDIRDAEESKAVDEFRQALVLDELLPEKHDDYHMMLRFLKARKFDVEKSKQMWSDMLQWRKEFGADTIGEDFEFKELDEVLQYYPHGHHGVDKDGRPVYIERLGQVDATKLMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKHARELITRLQKIDGDNYPETLNRMFIINAGSGFRMLWSTVKSFLDPKTTSKIHVLGNKYQSKLLEMIDESELPEFLGGTCTCADQGGCMRSDKGPWKDEEILKMVQNGEHKCSRRCEVPVIEERTTSEEHETVKSEAKLTTQKSSAIAEVASSKAYKYEDFVPAAEKTAWKKVDKNDKFAVSKGRIEISWLPLFYRKHIPNDKDFLKSSCVVPMPNYNT 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03860 457 SMART CRAL_TRIO_N_2 103 128 IPR011074 -
Spst3g03860 457 Gene3D - 136 348 IPR036865 -
Spst3g03860 457 SUPERFAMILY CRAL/TRIO N-terminal domain 77 143 IPR036273 -
Spst3g03860 457 SUPERFAMILY CRAL/TRIO domain 148 344 IPR036865 -
Spst3g03860 457 FunFam SEC14 cytosolic factor 136 348 - -
Spst3g03860 457 CDD SEC14 149 317 IPR001251 -
Spst3g03860 457 Pfam CRAL/TRIO, N-terminal domain 99 127 IPR011074 -
Spst3g03860 457 SMART sec14_4 148 319 IPR001251 -
Spst3g03860 457 Pfam CRAL/TRIO domain 154 316 IPR001251 -
Spst3g03860 457 PRINTS Cellular retinaldehyde-binding protein signature 275 294 - -
Spst3g03860 457 PRINTS Cellular retinaldehyde-binding protein signature 106 128 - -
Spst3g03860 457 PRINTS Cellular retinaldehyde-binding protein signature 308 317 - -
Spst3g03860 457 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 148 322 IPR001251 -
Spst3g03860 457 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 45 385 - -
Spst3g03860 457 Gene3D - 64 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03860 Spst-Chr3 88664369 88668021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03860 82 313 Acyl Lipid Metabolism Gene Families AT5G47730 28.631 1.59e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03860 K26544 - gmx:100785716 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03860 3 88664369 88668021 Spst3g03860 3 88664369 88668021 ECH
Spst2g02551 2 25212853 25216956 Spst3g03860 3 88664369 88668021 ECH