Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02551 ATGGCTATGCCGTCCATACCTATAACAGATCGATCTGCTAAAGGTGCTTCTGTGAGCAATTTTGATTATGTAAAAACAGGCATGGAGATGGAATATTCAGAGGATGATAAGAAAACAAAGCTGGCCTCTTTAAAGAAGGTAGCAATCAGTGCATCTTCGAAGTTCAAGCATTCCTTGCAGAAGAAGGGGAGGAGGCATAGCAGGGTTATGTCTCTTGCTATTGAGGATGACGTTGACGCAGAAGAGTTGCAATCAGTTGATGCTTTTCGCCAAACACTCATCTTGGAAGAGCTATTACCCTCAAAACATGATGATCATCATATGATGTTAAGGTTCTTGAGAGCAAGAAAATATGACATTGAGAGAACAAAACAAATGTGGGCAGATATGCTTCAGTGGAGGAGGGAGTTTGGTGCTGACACAATTATGGAGGATTTTGAATTCAAGGAGATAGAAGAAGTTCTAAAATACTACCCGCAAGGGCATCACGGTGTTGATAAGCAAGGACAACCTGTTTACATAGAAAGGTTGGGTCAGGTTGACTCTAACAAACTGCTACAAGTCACAACTTTGGATCGCTATCTTAAGTACCATGTGAGAGAGTTTGAGAGGACATTCGCTGTTAAGTTCCCTGCATGTTCAATCGCAGCCAAGAAACACATTGACCAAAGCACAACTATCTTAGATGTGCAGGGAGTGGGTCTCAAAAGTATGAACAAAGCTGCAAGGGATCTCATCCAGCGTCTACAGAAGATTGATGGTGACAACTACCCTGAGACCTTAAATCGTATGTTCATCATTAATGCTGGTTCTGGATTTAGGCTATTGTGGAACACCGTTAGGACATTCCTTGACCCTAAGACCACCGCCAAAATCCATGTCCTAGGAAACAAATACCAGAGCAAGCTGCTTGAAATCATTGATGCCAGTGAACTTCCGGAGTTCTTGGGTGGTACTTGTACCTGTGGAGACAAAGGTGGTTGTTTACTTTCAGACAAGGGACCATGGAATGACCCAGAAATCTTGAAGATGGTTCATAATGGCGAAGGAAAATGCAAGAGGAAAACCTTATCCAGATTTGAGGTGAAAACTATCATTGAAGAAGAAACAGCGTGTCCAAAGGATTGGGATTCTTTAAACAAAGAACCTGAAGCCATGGAGCATCCTGGTGCTGCTCCAAATGTGGCCTATGGCCAAGTGATTGACAAGCCAGTGAATACATCTTGGAAAAAAGCTGGAAAAAGTGATGAGTTAGCCCTTTCTACAGATCACTTGCCTAGAAACAATAGTTCTAATGGGTTTAGAATCTCGTTTACTGGTGGACTCATGTCGATTATTATGGGAGTGATAACAATTATCCGCATGGCAAAGAACATGCCAAGGAAAATCGCTGGAGCTGACATGTATGGTAACACATCATATTGTGATGGGAACATGATGAAAGCACCTGCCCTTTGCATGGATGATCAAATGGCCATGATGAAGCGCATGGCTGAACTAGAAGAAAAGGTGAATTTCCTCTCTACGAAACCTGTAATGCCACCTGAGATAGAAGAATTGCTGAATAATGCTCTTAACAGAGTCAGCACGCTGGAGCAAGAGTTGGCTACCACCAAAAAGTCACTTGACGATACCCTTTCTAGACATGTGGAGCTTCAGGCTCAAATTGACAAAAAGAAAAAGAAGAAGTTTATTGGCTTGCTTCGCAGATTCTATCTTGAAGAAGTCCGAAGAAAGTCAAGTTCCGTAAATTCATTTTTACCTGGCCAAATTATTCTTCTCATAATCTTACCATCTAAAAAAAGATTTCTAAAAGTCTCGTGGATTCACGCGGGCTACATTTCCCCACTCTTTTTGAAGTAA 1863 0.4187 MAMPSIPITDRSAKGASVSNFDYVKTGMEMEYSEDDKKTKLASLKKVAISASSKFKHSLQKKGRRHSRVMSLAIEDDVDAEELQSVDAFRQTLILEELLPSKHDDHHMMLRFLRARKYDIERTKQMWADMLQWRREFGADTIMEDFEFKEIEEVLKYYPQGHHGVDKQGQPVYIERLGQVDSNKLLQVTTLDRYLKYHVREFERTFAVKFPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVRTFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCGDKGGCLLSDKGPWNDPEILKMVHNGEGKCKRKTLSRFEVKTIIEEETACPKDWDSLNKEPEAMEHPGAAPNVAYGQVIDKPVNTSWKKAGKSDELALSTDHLPRNNSSNGFRISFTGGLMSIIMGVITIIRMAKNMPRKIAGADMYGNTSYCDGNMMKAPALCMDDQMAMMKRMAELEEKVNFLSTKPVMPPEIEELLNNALNRVSTLEQELATTKKSLDDTLSRHVELQAQIDKKKKKKFIGLLRRFYLEEVRRKSSSVNSFLPGQIILLIILPSKKRFLKVSWIHAGYISPLFLK 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02551 620 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 150 324 IPR001251 -
Spst2g02551 620 SMART CRAL_TRIO_N_2 105 130 IPR011074 -
Spst2g02551 620 Coils Coil 521 562 - -
Spst2g02551 620 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 29 560 - -
Spst2g02551 620 Gene3D - 67 137 - -
Spst2g02551 620 Gene3D - 138 349 IPR036865 -
Spst2g02551 620 Pfam CRAL/TRIO domain 156 318 IPR001251 -
Spst2g02551 620 SUPERFAMILY CRAL/TRIO N-terminal domain 76 146 IPR036273 -
Spst2g02551 620 SMART sec14_4 150 321 IPR001251 -
Spst2g02551 620 Pfam CRAL/TRIO, N-terminal domain 102 129 IPR011074 -
Spst2g02551 620 SUPERFAMILY CRAL/TRIO domain 150 345 IPR036865 -
Spst2g02551 620 CDD SEC14 151 319 IPR001251 -
Spst2g02551 620 FunFam SEC14 cytosolic factor 138 350 - -
Spst2g02551 620 PRINTS Cellular retinaldehyde-binding protein signature 310 319 - -
Spst2g02551 620 PRINTS Cellular retinaldehyde-binding protein signature 277 296 - -
Spst2g02551 620 PRINTS Cellular retinaldehyde-binding protein signature 108 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02551 Spst-Chr2 25212853 25216956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02551 84 315 Acyl Lipid Metabolism Gene Families AT5G47730 26.141 5.62e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02551 K26544 - gmx:100792335 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02551 2 25212853 25216956 Spst2g02551 2 25212853 25216956 ECH
Spst2g02551 2 25212853 25216956 Spst3g03860 3 88664369 88668021 ECH