Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03780 ATGGGAAGCACTTCAGCTCCAGAGGCTCTCTCTGCTTTTCTATTGCTTTGTTTCTATGGCACACTAGTTTGTGCCAAATACATAAAGTACGATACTGGGGCTGCTATTGTGCCAGGAAAATTGAATGTTCACCTGGTTCCACACTCCCATGATGATGTTGGTTGGCTCAAAACCGTTGATCAGTATTACGTTGGATCAAACAATACTATTCAGGGGGCTTGTGTTGAGAATGTGCTGGACTCGGTGGTTGTGTCTCTTCAGAAAGACCCAAATAGAAAGTTTGTGTTTGCCGAAGTGGCATTTTTCCATCGATGGTGGGAAGAACAAAGTCCAGCAACACAAGAACAAGTGCGAAAGCTTGTGGACGCGGGGCAGCTAGAATTCATAAACGGTGGTTGGTGCATGCACGATGAAGCGGCAACGCACTACATAGACATGATTGATCAAACGACTTTGGGCCATCGATTTTTAAAGGATGAGTTTAACAAGACTCCCACCGTTGGATGGCAGATTGATCCATTTGGACACTCTGCTGTGCAGGCTTACCTTCTCGGAGCTGAGCTTGGGTTTGATTCTATACATTTCGCAAGGATTGATTATCAAGATAGAGCGAAGCGCAAAGCTGATAAGTCTCTTGAAGTTGTTTGGCGTGCCTCCAAAACATTTGGTTCTTCATCTCAGATTTTTGCCAATGCTTTCCCCGTTCATTATAGTGCTCCAAATGGTTTCAACTTTGAAGTCAATAATGTTGATGTTAATGTTGTCCCAGTGCAGGTTCTAGCCCTCAACAACTAA 795 0.4415 MGSTSAPEALSAFLLLCFYGTLVCAKYIKYDTGAAIVPGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNTIQGACVENVLDSVVVSLQKDPNRKFVFAEVAFFHRWWEEQSPATQEQVRKLVDAGQLEFINGGWCMHDEAATHYIDMIDQTTLGHRFLKDEFNKTPTVGWQIDPFGHSAVQAYLLGAELGFDSIHFARIDYQDRAKRKADKSLEVVWRASKTFGSSSQIFANAFPVHYSAPNGFNFEVNNVDVNVVPVQVLALNN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03780 264 PANTHER ALPHA-MANNOSIDASE 22 253 - -
Spst3g03780 264 CDD GH38N_AMII_LAM_like 41 246 - -
Spst3g03780 264 FunFam Alpha-mannosidase 41 264 - -
Spst3g03780 264 Gene3D Glycoside hydrolase 38, N terminal domain 41 264 IPR027291 -
Spst3g03780 264 Pfam Glycosyl hydrolases family 38 N-terminal domain 42 251 IPR000602 GO:0004559|GO:0006013
Spst3g03780 264 SUPERFAMILY Glycoside hydrolase/deacetylase 30 256 IPR011330 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03780 Spst-Chr3 87832111 87834466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03780 23 258 Glycoside Hydrolase AT3G26720 70.339 3.51e-119 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03780 K01191 - gmx:100806748 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03780 3 87832111 87834466 Spst3g03780 3 87832111 87834466 ECH
Spst3g03779 3 87826077 87831719 Spst3g03780 3 87832111 87834466 PCT