Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03441 ATGATGTACGAGCAGCAGCAACGCTTTCAGCAGCCCATGACGGTGAAGGTGGATATCAGGAAGAAAGCGGAGAGAAGCAAAGGCATAGAGGAAGAGAGGCTTGAAATAGTGGACTTGAGTGCCATGTCCTTGGACTCTCTTCCCAACCCCTCTCTTAATTTAGCCACCATTTGCAAGTTGGATCTCTCTAATAACAATCTTCAGAATATACCAGAGTCCTTAACAGCGAGACTGTTGAACATGGTGGTGTTGGACGTGCACTCCAATCAACTTAGGTATCTTCCCAACTCCATTGGCTGCCTCTCTAAGCTCAAGGTTTTGAATGTCTCTGGCAACCTCATCGAATACCTTCCAAAAACAATTGAAAATTGCAGAAGCTTAGATGAACTGAATGCGAACTTCAACAAGTTGATCCAGCTTCCAGAGAACATAGGGTTCGAGCTGATAAACCTGAAGAAGCTATCAGTGAACTCGAACAAGCTGGTGTTCCTTCCTCGCTCGACCTCTCACATGACCGCTCTGAAGATTCTGGACGCGCGTTTGAACTGCCTGAGGTCTCTTCCAGAAGATCTCGAGAACCTGGTAAACCTAGAAATCCTGAACGTGAGCCAGAACTTCCAGTACCTTGATTCTCTACCCTATTCGGTGGGGCTGCTCCTCTCCCTGGTAGAACTCGACGTCAGTTACAACAAGATCAGGTCCTTGCCGGACTCCATCGGGTGCCTGAAGAAGGTGCAGAAGCTAAGCGTGGAAGGGAACCCTCTGAGTTCGCCGCCACCGGAAGTGATAGAGCAGGGGTTGCATGCGGTGAAGGAGTACCTGTGCGAGAAGATGAACGCCGGCCATCAGAGCCCCATCAAGAAGAAGTCGTGGGTGGGGAAGCTGGTGAGGTATGCCACCTTCAACGGACACACCTTAGGTGGACCCCGCGAGGAACGTGAGACGTTCATCATGCCTGATTACAGACCAATCGATAGCCTCGCTTCGCCGCGCTACGCGGCCATGTTCTCACCTCGCCGCCTCTTCTCACCCCGCAATTACTTCTCCACCTGA 1053 0.509 MMYEQQQRFQQPMTVKVDIRKKAERSKGIEEERLEIVDLSAMSLDSLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQLRYLPNSIGCLSKLKVLNVSGNLIEYLPKTIENCRSLDELNANFNKLIQLPENIGFELINLKKLSVNSNKLVFLPRSTSHMTALKILDARLNCLRSLPEDLENLVNLEILNVSQNFQYLDSLPYSVGLLLSLVELDVSYNKIRSLPDSIGCLKKVQKLSVEGNPLSSPPPEVIEQGLHAVKEYLCEKMNAGHQSPIKKKSWVGKLVRYATFNGHTLGGPREERETFIMPDYRPIDSLASPRYAAMFSPRRLFSPRNYFST 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03441 350 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515
Spst3g03441 350 SMART LRR_bac_2 194 215 - -
Spst3g03441 350 SMART LRR_bac_2 173 190 - -
Spst3g03441 350 SMART LRR_bac_2 124 143 - -
Spst3g03441 350 SMART LRR_bac_2 219 238 - -
Spst3g03441 350 SMART LRR_bac_2 101 120 - -
Spst3g03441 350 SMART LRR_bac_2 148 167 - -
Spst3g03441 350 SMART LRR_bac_2 54 73 - -
Spst3g03441 350 SMART LRR_typ_2 219 241 IPR003591 -
Spst3g03441 350 SMART LRR_typ_2 148 170 IPR003591 -
Spst3g03441 350 SMART LRR_typ_2 78 100 IPR003591 -
Spst3g03441 350 SMART LRR_typ_2 54 77 IPR003591 -
Spst3g03441 350 SMART LRR_typ_2 171 194 IPR003591 -
Spst3g03441 350 SMART LRR_typ_2 101 124 IPR003591 -
Spst3g03441 350 SMART LRR_typ_2 242 265 IPR003591 -
Spst3g03441 350 Gene3D Ribonuclease Inhibitor 2 144 IPR032675 -
Spst3g03441 350 Gene3D Ribonuclease Inhibitor 147 276 IPR032675 -
Spst3g03441 350 ProSiteProfiles Leucine-rich repeat profile. 56 77 IPR001611 GO:0005515
Spst3g03441 350 PANTHER - 148 266 - -
Spst3g03441 350 Pfam Leucine rich repeat 150 205 IPR001611 GO:0005515
Spst3g03441 350 Pfam Leucine rich repeat 59 114 IPR001611 GO:0005515
Spst3g03441 350 SUPERFAMILY L domain-like 34 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03441 Spst-Chr3 84151170 84154662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03441 52 265 Receptor kinase-like Gene Family AT5G51350 31.390 1.68e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03441 - - gmx:100783239 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03441 3 84151170 84154662 Spst3g03441 3 84151170 84154662 ECH
Spst3g03441 3 84151170 84154662 Spst9g02903 9 63095755 63098355 PCT