Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03405 ATGGCTTTAAATTACCCTTCTTCAACCTACTTCATTCTGCTACTAGTAACCATAACCCGTTTGATATACACTGTGGGCAAAACTGAGCAATGGAAAGCCCCGATTCTACCAGATCTTGACATTGAAAATATATCCCACCAGCTTCATGATGACCCTGAAGCCATTCAAATGGCTTCAAGGGACTATGGCCATATCGTGCATGAACTCCCAGCAGCTGTGTTTCATCCGTCTTCTATAGATGACATAGCCACCTTGATAAAATCCTCGTACAATAGCTTTGCCCCTTTTCACATAGCTGCGAGGGGCCAAGGCCACTCCACTCATGGGCAAGCCATGGCTCGTGATGGGGTTGTGGTTAACATGGCCACCCTCAGGAAACAAAGAAATGGGGTTGCGATTAGTGTCTCTAAGGACCCTTTGTTAGGTCACTATGCTGATGTTGGAGGGGAACAACTCTGGATTGATGTGCTACACGCCTCACTAGAACATGGACTTGCACCCGTTTCTTGGACTGATTATTTGTACTTGACAGTGGGAGGAACACTTTCCAACGCTGGAATCAGTGGCCAGAGTTTCCGCTATGGACCTCAAATCAGCAACGTTCACGAAATGGATGTGATAACTGGAAAAGGAGAGTTCGTAACCTGCTCTAAGCAGAGGAACTTGGAGTTATTCAACGCGGTTCTTGGAGGCTTGGGACAATTTGGAGTCATAGCAAGGGCGAGAATAGCTCTTGAGGCAGCACCCAAAAGGGTTAAGTGGGTCAGACTACTTTATAGTGACTTTTCTGCTTTTACCAAAGACCAGGAACGATTAATCTCAATCAATGGAAGGAAACAAAAGAATGCATTGGATTTTTTGGAAGGCATGCTGCTAATGAACCAAGGCCCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATCCCACAATAGCTTCTTTAATAACTCAACATACCATCCTCTACTGTCTTGAAGTCGCTAAATATTATGACGACCAAACCGAGAAAAATGTGGCCAAGGAAATGCAAGTTTTGCTCCAAGGGCTGGCTTATATCCCCGGATTTTATTATGAGAAAAATGTCTCATATGTTGAGTTCTTGAATAGAGTCCGAAGTGGGGAGTTGAAGCTTCAGTCGCAAGGACTGTGGGAGGTTCCTCACCCGTGGCTTAATTTGTTCATACCAAAATCACAAATCTTGGATTTTAATTCAGGAGTATTCAAAGATATAATACTTAAAAGAAACATCTCCTCTGGACCAGTCTTGGTTTACCCTATGAATAGAAACAAGTGGGACGATAGGATGTCAGCATCTATACCAGACGAGGATGTCTTCTACACAGTTGGGTTTTTGCACTCAAGTGGGTTTGATTCTTGGAAGGCGTATGATGCTCAAAACAGAGAAATTTTGGAGTTCTGTAGTGATGCTGGCATTAAGGTTAAGCTATATCTTCCCAACCACAGCACACAGGAAGAATGGACAAACCATTTTGGTCCTAAATGGATGAAATTCTTAGAAAGAAAACTCCAGTTTGATCCAAGAATGATTCTATCACCCGGGCATAAAATCTTCCACAAACAACTACAACCAGCATTTTAA 1608 0.431 MALNYPSSTYFILLLVTITRLIYTVGKTEQWKAPILPDLDIENISHQLHDDPEAIQMASRDYGHIVHELPAAVFHPSSIDDIATLIKSSYNSFAPFHIAARGQGHSTHGQAMARDGVVVNMATLRKQRNGVAISVSKDPLLGHYADVGGEQLWIDVLHASLEHGLAPVSWTDYLYLTVGGTLSNAGISGQSFRYGPQISNVHEMDVITGKGEFVTCSKQRNLELFNAVLGGLGQFGVIARARIALEAAPKRVKWVRLLYSDFSAFTKDQERLISINGRKQKNALDFLEGMLLMNQGPINNWRSSFFPLSDHPTIASLITQHTILYCLEVAKYYDDQTEKNVAKEMQVLLQGLAYIPGFYYEKNVSYVEFLNRVRSGELKLQSQGLWEVPHPWLNLFIPKSQILDFNSGVFKDIILKRNISSGPVLVYPMNRNKWDDRMSASIPDEDVFYTVGFLHSSGFDSWKAYDAQNREILEFCSDAGIKVKLYLPNHSTQEEWTNHFGPKWMKFLERKLQFDPRMILSPGHKIFHKQLQPAF 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03405 535 Gene3D - 121 250 IPR016169 -
Spst3g03405 535 FunFam Cytokinin dehydrogenase 2 251 486 - -
Spst3g03405 535 SUPERFAMILY FAD-binding/transporter-associated domain-like 47 245 IPR036318 GO:0050660
Spst3g03405 535 SUPERFAMILY FAD-linked oxidases, C-terminal domain 249 527 IPR016164 GO:0003824|GO:0050660
Spst3g03405 535 Gene3D - 251 486 IPR016170 -
Spst3g03405 535 ProSiteProfiles PCMH-type FAD-binding domain profile. 66 248 IPR016166 GO:0071949
Spst3g03405 535 Pfam FAD binding domain 70 217 IPR006094 GO:0050660
Spst3g03405 535 Gene3D - 51 527 IPR016167 -
Spst3g03405 535 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 527 IPR015345 GO:0009690|GO:0019139|GO:0050660
Spst3g03405 535 PANTHER GULONOLACTONE OXIDASE 18 527 - -
Spst3g03405 535 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 70 105 IPR006093 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03405 Spst-Chr3 83830163 83833515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03405 K00279 - gmx:100787676 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03405 3 83830163 83833515 Spst3g03405 3 83830163 83833515 ECH
Spst3g03405 3 83830163 83833515 Spst9g02871 9 62894264 62897977 PCT