Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02948 ATGGAAGGTGCAGAAGAAGGAATAGAGAGGGTTGTGGACTCGAAGGACATGCAACAGCAGACAAAAGCTTTCGACAAGCTCACTGACCGGGTCGAGGATCACCAACTCGATTCCTCTCGCGTCCAAGAGGCCATGGCATCAATTGCTGCATCTGCTGAAGCTGATTTGCAAGCCATGCGTTTGAGGGAGAAAGAATTAGCTGCTGTTAAGATAAATGCCGCCGATGTTGACATTATCGCTAATGAATTAGAGCTGGATAAAAAGGTGGCTGAAAGGACCTTGCGTGAGCATAAAGAATTTTTGGATATCTCCAGGTACCATGACAGGTCTGTTCTTCTCCATGCATCAAATTGA 354 0.4633 MEGAEEGIERVVDSKDMQQQTKAFDKLTDRVEDHQLDSSRVQEAMASIAASAEADLQAMRLREKELAAVKINAADVDIIANELELDKKVAERTLREHKEFLDISRYHDRSVLLHASN 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02948 117 Coils Coil 80 100 - -
Spst3g02948 117 PANTHER HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER 3 98 - -
Spst3g02948 117 Pfam HYPK UBA domain 69 98 IPR044034 -
Spst3g02948 117 Coils Coil 17 37 - -
Spst3g02948 117 CDD UBA_HYPK 69 98 IPR038922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02948 Spst-Chr3 79144845 79146226 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02948 - - gmx:100789285 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02948 3 79144845 79146226 Spst3g02948 3 79144845 79146226 ECH
Spst3g02948 3 79144845 79146226 Spst6g01538 6 14435842 14441881 PCT