Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02845 ATGGATTTTCTTGCTGACCCTTTACATGTTGTGGAAACTAAGGATGGGACTGTCTCAGTAGCTTCTACGTTTGCTGGTCACCAGGAAGTTGTGCAGGATACAGACCACAAATATCTAAGAATAGCTGTTGAAGAAGCATATAATGGCGTAGAGCGCAAAGATGGAGGCCCATTTGGTGCTGTTATAGTTCGAGAGGATGAAATAGTTGCTAGTTGCCACAACATGGTTCTGAGTAACACAGACCCAACTGCTCATGCTGAGGTGACAGCAATAAGAGAGGCATGTAAGAAGCTTAACCAGATAGAACTTTCAGACTGTGAAATATTTACTTCCTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCCCGAATTAAGAGGCTAGTTTATGGAGCAAAAGCTGAGGCAGCAATTGCTATTGGGTTCGATGATTTTATTGCAGATGCACTGCGAGGTACTGGATTCTATCAGAAAGCAACATTGGAAATCAAAAGAGCTGATGGGAATGAGGCCATCATTGCTGAAGAGGTCTTTGAGAAAACAAAGACAAAATTCCAAATGTATTAG 573 0.4258 MDFLADPLHVVETKDGTVSVASTFAGHQEVVQDTDHKYLRIAVEEAYNGVERKDGGPFGAVIVREDEIVASCHNMVLSNTDPTAHAEVTAIREACKKLNQIELSDCEIFTSCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKATLEIKRADGNEAIIAEEVFEKTKTKFQMY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02845 190 Gene3D Cytidine Deaminase, domain 2 34 190 - -
Spst3g02845 190 FunFam tRNA-specific adenosine deaminase 33 189 - -
Spst3g02845 190 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 33 147 IPR002125 -
Spst3g02845 190 CDD nucleoside_deaminase 39 146 - -
Spst3g02845 190 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 28 137 - -
Spst3g02845 190 SUPERFAMILY Cytidine deaminase-like 27 148 IPR016193 GO:0003824
Spst3g02845 190 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 85 122 IPR016192 GO:0008270|GO:0016787
Spst3g02845 190 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 34 133 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02845 Spst-Chr3 77982683 77984713 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02845 - - gmx:100500436 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02845 3 77982683 77984713 Spst9g02758 9 61824289 61825784 PCT