Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02502 ATGAACAAACCCCAACCTCACCAACTAATCATCTTCGCTTTCTTACTTTCCTTTTCCCTCGCAAACGTCGTCGTTTCAGCTCGACTCTTCCCCAACGTCTCCTCCTGGCTCCCCGCCCACGCGCCTTCCCTCGGAGGCGCGTGGGACGCCTTCCGTAACTTCACCGGCTGCCATCGCGGTGATAATTATGACGGCCTCGCCAACCTCAAATCCTACTTCCAGCGCTTCGGCTACATCCCTCACGCGCCGCCCTCAAACTTCTCCGATGAATTCGACGACGCGCTCGAATCCGCGATCAAAACCTACCAGAAGAACTTCAACCTCAACGTCACCGGTGTCCTCGACGATGCCACGCTCCGGCAGATCGTCCTGCCGCGATGCGGCGTCGCTGACATCGTAAACGGCACCACGACGATGAACGCCGGCAAGGGGAACGAAACGGCGCCTTTCAGCAAGCCCCGGTTCCACTCGGTGGCGCACTACTCTGTGTTCCCTGGCATGCCGCGGTGGCCGGTGGGAACGCAGGAGCTCACGTACGCGTTCAACCCTGGCAACGGCCTGAGCGACACCGTGAAAGGCGTTTTCGCCGCCGCGTTCGCGCGGTGGGCGGAGGTGACGTCGTTAACGTTCCGCGAAACATCGTCGTATTTAGGCGCCGACATCAGGATCGGTTTCTTCAGTGGCGACCACGGCGACGGGGAGCCGTTCGACGGGAGTCTGGGGACGCTGGCGCACGCCTTCTCGCCGACGAACGGGAGGTTCCACCTGGATGCCGACGAGGACTGGGTGGTTTCCGGCGACGTGACGCGGTCGGCGCTTTCGACGGCGGTGGATTTGGAATCGGTGGCGGTGCACGAGATTGGGCATTTGCTAGGGTTAGGTCACTCGTCTATGGAAGAAGCCGTAATGTTTCCGACGATTTCTTCAAGGAAGAAGAAGGTGGTGCTGTCCCAGGATGACATCACAGGGATTCAATACCTCTACGGTTCAAACCCCAATTACAACGGGTCCACTGCCACGTCAGCACCGGAGAGGGACTCCAGCGACGGTGGCTCTCGTGTAGGACCTTCTTGGAGCGTTTTTACTTTGTTGACTTTTTCATATTTATATTTTACATTATTATAG 1125 0.5813 MNKPQPHQLIIFAFLLSFSLANVVVSARLFPNVSSWLPAHAPSLGGAWDAFRNFTGCHRGDNYDGLANLKSYFQRFGYIPHAPPSNFSDEFDDALESAIKTYQKNFNLNVTGVLDDATLRQIVLPRCGVADIVNGTTTMNAGKGNETAPFSKPRFHSVAHYSVFPGMPRWPVGTQELTYAFNPGNGLSDTVKGVFAAAFARWAEVTSLTFRETSSYLGADIRIGFFSGDHGDGEPFDGSLGTLAHAFSPTNGRFHLDADEDWVVSGDVTRSALSTAVDLESVAVHEIGHLLGLGHSSMEEAVMFPTISSRKKKVVLSQDDITGIQYLYGSNPNYNGSTATSAPERDSSDGGSRVGPSWSVFTLLTFSYLYFTLL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02502 374 SMART col_5 166 330 IPR006026 GO:0006508|GO:0008237|GO:0008270
Spst3g02502 374 MobiDBLite consensus disorder prediction 335 354 - -
Spst3g02502 374 FunFam Metalloendoproteinase 1 56 334 - -
Spst3g02502 374 Gene3D Collagenase (Catalytic Domain) 54 335 IPR024079 GO:0008237
Spst3g02502 374 PRINTS Matrixin signature 195 210 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst3g02502 374 PRINTS Matrixin signature 219 247 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst3g02502 374 PRINTS Matrixin signature 282 307 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst3g02502 374 PRINTS Matrixin signature 122 135 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst3g02502 374 PRINTS Matrixin signature 316 329 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst3g02502 374 CDD ZnMc_MMP 169 329 IPR033739 GO:0008237|GO:0008270
Spst3g02502 374 SUPERFAMILY PGBD-like 56 132 IPR036365 -
Spst3g02502 374 PANTHER MATRIX METALLOPROTEINASE 46 342 - -
Spst3g02502 374 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 164 333 - -
Spst3g02502 374 Pfam Putative peptidoglycan binding domain 66 121 IPR002477 -
Spst3g02502 374 Pfam Matrixin 175 329 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02502 Spst-Chr3 72922366 72923490 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02502 - - gmx:100782143 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02502 3 72922366 72923490 Spst3g02502 3 72922366 72923490 ECH
Spst2g01489 2 13637575 13638705 Spst3g02502 3 72922366 72923490 PCT