Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01489 ATGAGCACTCACCACCAACAACAACGTTGTTTCCTCTTCCCTCTAACAACGTTACTTGTAGTTTTCCTCAGCATCACAGTTTCACCTGTCTCGGCTCGTCTATTTCCCAACGTGTCCTCAATCCCAAAGTGGAACACCTCCTACGTGCCACCAGCTGGCGCGTGGAACGCGTATCTTAACTACACCGGATGCCAACGCGGAAAAGCCTACGACGGCCTTTCCAATCTAAAAAACTACTTCCACTATTTCGGCTACATCCCCACTGCGCCGCCGTCGAACTTCACCGATGACTTCGACGATGCGCTCGAAGCCGCCATAAAGACATACCAGAAGAACTTCAATCTCAATATCACCGGCGAGCTAGACGACGCTACCATGAAGCAAATCGTGCGCCCGCGCTGCGGCGTGGCCGACGTAATCAACGGCACGTCGACAATGAACTCCGGAAAGTCGAACACAACGACCACGCCGAAGTTCCACACGGTGGCTCACTACTCGTTCTTCGATGGCATGCCGCGGTGGCCGGAGGGGACAGAAGAGCTCACCTATGCGTTTGACCCTGACAACAGCCTAGACGACGTCTCCAAGAGCGTTTTCAGTAACGCGTTTAAGAGATGGGCAGAGGTTACCACAATCTCGTTCCGCGAAACGTCGTCGTACAGGACTGCGGATATCACGATAGGGTTTTATAGTGGGGATCACGGGGATGGTGAACCGTTCGACGGGGTATTGGGAACATTGGCGCACGCGTTCTCTCCCACGAACGGGATGTTTCACCTCGACCAGGCGGAGGACTGGGTGGCCACCGGCGACGTCACCAAGGCCTCCGTGTCCAACGCCGTGGACCTGGAATCCGTGGCGGTGCACGAGATAGGCCACTTGCTCGGTCTCGGACACTCCTCCGTCGAAGAAGCCATCATGTACCCTACGATTACGGCGAAAACGAGGAAGGTGGAACTCACCCAAGACGATATTGAAGGGATTCAGGTTCTCTACGGTTCCAACCCTAACTACACCGTCACCTCTACCTCAGGGAACGATTCCAGTGACGGTGTTCGCCACGTGCGGGCCACGTGCGGCGTGCTTTTTGCCTCTCTCTTGCTCTTCCTAGTATTTGGATTGCACGTGTGA 1131 0.5508 MSTHHQQQRCFLFPLTTLLVVFLSITVSPVSARLFPNVSSIPKWNTSYVPPAGAWNAYLNYTGCQRGKAYDGLSNLKNYFHYFGYIPTAPPSNFTDDFDDALEAAIKTYQKNFNLNITGELDDATMKQIVRPRCGVADVINGTSTMNSGKSNTTTTPKFHTVAHYSFFDGMPRWPEGTEELTYAFDPDNSLDDVSKSVFSNAFKRWAEVTTISFRETSSYRTADITIGFYSGDHGDGEPFDGVLGTLAHAFSPTNGMFHLDQAEDWVATGDVTKASVSNAVDLESVAVHEIGHLLGLGHSSVEEAIMYPTITAKTRKVELTQDDIEGIQVLYGSNPNYTVTSTSGNDSSDGVRHVRATCGVLFASLLLFLVFGLHV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01489 376 SMART col_5 170 334 IPR006026 GO:0006508|GO:0008237|GO:0008270
Spst2g01489 376 SUPERFAMILY PGBD-like 64 139 IPR036365 -
Spst2g01489 376 CDD ZnMc_MMP 173 333 IPR033739 GO:0008237|GO:0008270
Spst2g01489 376 Pfam Matrixin 178 333 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Spst2g01489 376 Pfam Putative peptidoglycan binding domain 73 128 IPR002477 -
Spst2g01489 376 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 168 337 - -
Spst2g01489 376 PRINTS Matrixin signature 129 142 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst2g01489 376 PRINTS Matrixin signature 320 333 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst2g01489 376 PRINTS Matrixin signature 223 251 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst2g01489 376 PRINTS Matrixin signature 199 214 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst2g01489 376 PRINTS Matrixin signature 286 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst2g01489 376 Gene3D Collagenase (Catalytic Domain) 61 339 IPR024079 GO:0008237
Spst2g01489 376 PANTHER MATRIX METALLOPROTEINASE 53 338 - -
Spst2g01489 376 FunFam Metalloendoproteinase 1 63 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01489 Spst-Chr2 13637575 13638705 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01489 - - gmx:100803218 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01489 2 13637575 13638705 Spst3g02502 3 72922366 72923490 PCT