Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02494 ATGAAGGTAGAGGACAGGGATCGAGAACGAGATAGGGAGGACGGGATGAAAGAAAGGGACCGTGAATGCCGAGAAAGGGACAAATCTAATGCAACTACTAACAAGGATGTTTCAGCTCCTAAGATGTCTCTATTTGCCAGCAAAGATAAGTATGCAGCAAAACCTATAAGTGAGCTGGATCTTTCTAACTGTGAACAATGCACTCCCAGTTACCGTCTTCTACCCAAAAATTACCTAATACCGCCAGCCAGCCAGAGAACAGAACTTGGTGCAGAGGTGTTGAATGATCACTGGGTTTCTGTTACTTCTGGGAGTGAGGACTATTCCTTTAAACATATGCGCAAAAACCAGTATGAGGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAACGGGGCAACTAAGCGTGTTGAAGAGCTCTTAGAAAAAATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTAACAGCATTAAATCTTAGGTGCATTGAACGATTATATGGTGATCATGGACTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTCAATAAAGTATGGGCTGAAATATATGCAAAGAACTATCACAAATCACTAGATCACCGTAGTTTTTACTTTAAACAGCAGGATACAAAAAGCTTGAGCACTAAAGTCTTTGGTCTGTCACCCCCCCCCCCCCCCTTTAATGCGTCTTATCTCATCCTTGGTCTCCGATCCATAATTCCAACCATCACCCCCTTTATGGTGGGAAACTACTTTGTCAACGAGTCTCGTCACATCACATCATCCACATGCCTCACATGTGCCTTTTGCCCTTTTGCTTTCCTCCGCTCTTATTTCTTATTTTGTCTTCTTCTCCTTGTTTTTGTCATCGCCTTTCTCCTCCGGTGTGTGTTAGTCCAATCTCAGCTGCTCCTGGTTTTGATTTCTTTTGCACTTTTTGCTGCTTGTGTTGCATTGAGTGTTTTGAATGGCTGTGACGTTCGCCTTACTCGTAAATGCAAAGCGAGCATTGCTCTTGATGCAAGAGTTGTTATGTCGACTCTGTCAGCAATCGGGAATATTCCTTCTAAAGAGGGCGGTATTCTCGATATGTTTTTTAGGTTCCTCGAGATGAATAGTGGCAAAACAGGACAAGCCGCACAAGAATTGCTCGAGACAACCAAATCGCTCATCGCCGATGTTAAGAAAAAAATGGTGGAATTGGAAGCTCAGGTGGTGGAAGAAAGAGAGTTGCGGAGGTGGAGCGGGCTCAACTGA 1377 0.4321 MKVEDRDRERDREDGMKERDRECRERDKSNATTNKDVSAPKMSLFASKDKYAAKPISELDLSNCEQCTPSYRLLPKNYLIPPASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNGATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVFGLSPPPPPFNASYLILGLRSIIPTITPFMVGNYFVNESRHITSSTCLTCAFCPFAFLRSYFLFCLLLLVFVIAFLLRCVLVQSQLLLVLISFALFAACVALSVLNGCDVRLTRKCKASIALDARVVMSTLSAIGNIPSKEGGILDMFFRFLEMNSGKTGQAAQELLETTKSLIADVKKKMVELEAQVVEERELRRWSGLN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02494 458 Pfam Sin3 family co-repressor 65 156 IPR013194 -
Spst3g02494 458 Coils Coil 424 451 - -
Spst3g02494 458 MobiDBLite consensus disorder prediction 1 38 - -
Spst3g02494 458 MobiDBLite consensus disorder prediction 1 32 - -
Spst3g02494 458 Coils Coil 132 152 - -
Spst3g02494 458 PANTHER SIN3B-RELATED 44 256 IPR039774 GO:0003714
Spst3g02494 458 SMART hdac_interact2seq4b 63 163 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02494 Spst-Chr3 72747309 72751511 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02494 K11644 - gmx:100781798 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02494 3 72747309 72751511 Spst3g02494 3 72747309 72751511 ECH
Spst3g02494 3 72747309 72751511 Spst3g02495 3 72758720 72763256 PCT