Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01848 TGGTCCTTCTTTGACATTGATGATTACTCCGTAGATGACTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTTCAGGATGATGGAGCCTCTAAAGCATGCATCTAAGAAGTCTCGAAGAGATAGGAGCCGGGGAAAATCATCTGGACGGTCCTCCAGTGATGAAGCTATGGAACAACAAATTTGGAAAGATTTGCCCGAGGATCTACTTGAGCCTGTGATTGCAAGACTTCCCATTGCAACATTTTTTCGCTTCCGCACTGTATGCCAGCGATGGAATTCCTTGCTGACTTCTCAAAGTTTTTCTCGGCATTATGCTCAAGTCACACAAGCAAACCCATGGTTTTACACTGTAACTCATGTGCATGCAAATTCTGGAGTCATGTATGACCCTTCCATGAAGAAGTGGCACCATTGCACTACGTCAACACTGCCTGCAGAATTGATAGTTTTACCGGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACGTATACCGTCACAATTTATATGTTTGTAACCCATTGACTCGATCCTTAAAGGAGTTACCAGCTTGGTCAGTTAGGGTTGGGTCTCGTGCTGCTATAGGAATGATAGTAAATGGGAACTCAACTGGTGCTGGCTACAGGATCCTAGTGGTAGGTTGTGATGGAGAATATGGAATTTATGACTCAGTAACAAAGTCTTGGAATGATCCAGGAAACATCTCTGGAGATATTAAGCTGCCGCTGTCATTCAATTTTAGGTCACAAGCCATTTCTATTGACAGCACCCTGTACTTCATGCAGTCAGATCCTGAAGGGATTGTTTCCTATAATATGGAAACTGGGGTTTGGATGCAGTACATAATCCCAGCGCCATTGCATCTGACTGACCACGCACTGGCTGAGTGTGATGGCCGGATATTCCTTGTGGGGTTGCTCACAAAGAATGCAGCCACGTGTATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGGCTACCTCATGCTATCCTTGAGATCAAAACAAATGAATCGATTGGTTACGTACAACATAGCAAGGAAGGAATGGATGAAGGTTCCTGGGTGTGTGGTGCCACATGAAAGAAAACGGCGATGGATAGCACATGGTACTGCATTTTATCCATGCCTCACTGCAACGGCTTGA 1242 0.4509 WSFFDIDDYSVDDFCGLVMAAGKSGSFRMMEPLKHASKKSRRDRSRGKSSGRSSSDEAMEQQIWKDLPEDLLEPVIARLPIATFFRFRTVCQRWNSLLTSQSFSRHYAQVTQANPWFYTVTHVHANSGVMYDPSMKKWHHCTTSTLPAELIVLPVASAGGLVCFLDVYRHNLYVCNPLTRSLKELPAWSVRVGSRAAIGMIVNGNSTGAGYRILVVGCDGEYGIYDSVTKSWNDPGNISGDIKLPLSFNFRSQAISIDSTLYFMQSDPEGIVSYNMETGVWMQYIIPAPLHLTDHALAECDGRIFLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKGYLMLSLRSKQMNRLVTYNIARKEWMKVPGCVVPHERKRRWIAHGTAFYPCLTATA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01848 413 SUPERFAMILY Galactose oxidase, central domain 128 392 IPR011043 -
Spst3g01848 413 SUPERFAMILY F-box domain 58 144 IPR036047 GO:0005515
Spst3g01848 413 FunFam F-box only protein 6 114 400 - -
Spst3g01848 413 CDD F-box_AtFBW1-like 66 103 - -
Spst3g01848 413 MobiDBLite consensus disorder prediction 32 59 - -
Spst3g01848 413 ProSiteProfiles F-box domain profile. 61 110 IPR001810 GO:0005515
Spst3g01848 413 PANTHER BNACNNG10540D PROTEIN 35 398 - -
Spst3g01848 413 Gene3D - 64 103 - -
Spst3g01848 413 FunFam F-box only protein 6 64 103 - -
Spst3g01848 413 Gene3D - 126 401 IPR015915 GO:0005515
Spst3g01848 413 SMART fbox_2 67 107 IPR001810 GO:0005515
Spst3g01848 413 Pfam F-box domain 64 103 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01848 Spst-Chr3 33394453 33395695 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01848 - - gmx:100775721 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01848 3 33394453 33395695 Spst3g01848 3 33394453 33395695 ECH
Spst1g01878 1 26964322 26968310 Spst3g01848 3 33394453 33395695 PCT