Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01878 ATGGAAGGGGTGGCCATGCTGAAGCAGCTAATTGGTCAGCTTCAGCACCTCTTGGACTCTTCCCATTCCCACTCTCTCATTCTTCAACCTTCTCATCACACTCTCCTCTTCCAACAACAACACCCCAGATGGACCTCTCTTGACGTTGAAGATAGCTCTGTGGATGACTTTTGTGGCCTTGTAATGACAGCGGGAAAGTCTGGCAGTTTTAGGATGTCAGAGCCTGTAAAGCCTCCACCTACTAAGAAGTCTCGTAGAGATAGAAGCAGGGGTAAATCATCTGGACGATCCTGTACAACTGAAGTTATGGAACAAGAGATTTGGAAAGATTTTCCTGAAGATTTATTTGAAGCTGTGATTGCACGACTTCCCATTGCTACATTTTTCCGCTTCCGCTCTGTCTGCCGGCAGTGGAATTCCATGCTGACTTCTCAAAGTTTTTCTCAGCATTGTACTCAAGTTACACAAGCAAATCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCCATGTACGACCCTTCTTTGAAAAAATGGCACCACCCAACTATATCAACACTGCCCACAAAATTGATTGTTTTACCCATGGCTTCTGCTGGTGGTTTAGTTTGCTTTCTTGACATTGGTCATCGAAACTTCTTTGTTTGTAACCCACTGACTCAATCCTTCAAGGAATTGCCTGCTCGATCAGTTAAGGTCTGGTCGCGTGTTGCTGTAGGGATGACAATAAATGGAAGCTCAGCTGGTTCAGGCTACAAGATCTTATGGGTGGGTTGTGATGGAGAATACGAAGTTTATGACTCAGTCAGGAATTCTTGGATTCGTCCAGGAAACATGCCTGCAGGTATGAAGCTGCCGCTGTCGCTCAACTTTAGGTCTCAAGCTGTCTCTATTGACAGCATGCTTTACTTCATGCGCTCAGACCCAGAAGGGATTGTTTCTTACGATATGGCAACTGGGGTTTGGAAACAATATATAATCCCAGCGCCATTGCATCTGACTGACCACACTCTGGCTGAGTGTGATGGCCAGATCATGCTCGTGGGTTTGCTCACGAAGAATGCAGCTACTTGTGTATGCATATGGGAGCTGCAGAAAATGACACTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAAACAAATGAACCGATTGGTTACTTACAACATAGCAAGGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCGCGTGGGAGAAAACGACAGTGGATAGCATGTGGTACTGCATTTCATCCGTGCCTGACGGCTGTGGCATGA 1374 0.46 MEGVAMLKQLIGQLQHLLDSSHSHSLILQPSHHTLLFQQQHPRWTSLDVEDSSVDDFCGLVMTAGKSGSFRMSEPVKPPPTKKSRRDRSRGKSSGRSCTTEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWNSMLTSQSFSQHCTQVTQANPWFYTITHENVNSGAMYDPSLKKWHHPTISTLPTKLIVLPMASAGGLVCFLDIGHRNFFVCNPLTQSFKELPARSVKVWSRVAVGMTINGSSAGSGYKILWVGCDGEYEVYDSVRNSWIRPGNMPAGMKLPLSLNFRSQAVSIDSMLYFMRSDPEGIVSYDMATGVWKQYIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIARKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01878 457 SUPERFAMILY Galactose oxidase, central domain 147 438 IPR011043 -
Spst1g01878 457 PANTHER BNACNNG10540D PROTEIN 84 451 - -
Spst1g01878 457 FunFam F-box only protein 6 158 444 - -
Spst1g01878 457 SUPERFAMILY F-box domain 103 185 IPR036047 GO:0005515
Spst1g01878 457 SMART fbox_2 111 151 IPR001810 GO:0005515
Spst1g01878 457 Gene3D - 212 450 IPR015915 GO:0005515
Spst1g01878 457 CDD F-box_AtFBW1-like 110 147 - -
Spst1g01878 457 Gene3D - 108 147 - -
Spst1g01878 457 MobiDBLite consensus disorder prediction 69 99 - -
Spst1g01878 457 ProSiteProfiles F-box domain profile. 105 150 IPR001810 GO:0005515
Spst1g01878 457 FunFam F-box only protein 6 108 147 - -
Spst1g01878 457 Pfam F-box domain 108 147 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01878 Spst-Chr1 26964322 26968310 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01878 - - gmx:100810179 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01878 1 26964322 26968310 Spst3g01848 3 33394453 33395695 PCT