Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01520 ATGGCAGCAACAATATCAGCAATGGCCATGATCAACACCAAATGCATCAACCCCACGTCACCAAAATTCCCCACCAAACTCACACCCTCAAAACCTTCTCTCCTTTCTCTCCCGAAGGGCCTCATCGCCTCACCCGAAAGCACCAACCTTTGCATTCCCACAGCCGTCGCCGGAGCCGTATTCACGGCCCTCGGAACCTGCGACGCCGCATTCGCCGCTCAGCAGATAGCGGAGATAGCGGAAGGCGACAACCGCGGGCTGGCGCTGCTGCTGCCCATAATCCCAGCCATAGGGTGGGTGCTGTTCAACATTTTCCAGCCGGCGCTCAACCAACTCAACCGCATGCGCAGCACCAAAGGGCTCATCATCGGGTTGGGTCTCGGCGGCTTAGCCGGACTCGTGGCGGCGCCGCCGCATGCCGCCGCCGCTGAAGTCGCGGCGATCGCCGAAGCCGCGAGTGACAACAGGGGACAGCTTCTGCTGTTTGTGGTGACACCGGCTATTGCGTGGGTGCTGTTCAACATCTTGCAGCCAGCTCTGAACCAGATCAACAGGATGAGATCCCAGTGA 570 0.5965 MAATISAMAMINTKCINPTSPKFPTKLTPSKPSLLSLPKGLIASPESTNLCIPTAVAGAVFTALGTCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIGWVLFNIFQPALNQLNRMRSTKGLIIGLGLGGLAGLVAAPPHAAAAEVAAIAEAASDNRGQLLLFVVTPAIAWVLFNILQPALNQINRMRSQ 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01520 189 Pfam Photosystem II protein Y (PsbY) 154 186 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Spst3g01520 189 Pfam Photosystem II protein Y (PsbY) 83 115 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Spst3g01520 189 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 188 IPR038760 GO:0009523
Spst3g01520 189 Hamap Photosystem II protein Y [psbY]. 83 117 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01520 Spst-Chr3 18651211 18651780 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01520 K02723 - gmx:100779397 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01520 3 18651211 18651780 Spst1g01936 1 27591134 27591721 PCT