Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01936 ATGGCAGCAACCATAGCAACAAGCATGGCCATAGTAAAGACCAAGAGCCTCAACCCCAAAAGCCCACCTTCAAGACCCACCCTTTCTCTTTTTTCCCTTCACAACCTTCCAAAGGGTCTAACCCCCACCGTTAACATCAACGTGTCAGCAACAAAATCTTCCGTAGCGGGCACTGCAATCGCGGGGGCAATTTTTTCTACCCTCGGAAACTGCGACGCGGCTTTTGCGGCGTCGCAAATAGCCCAAATAGCGGAGGGTGACAATCGTGGGCTTGCACTGTTGCTGCCGGTGGTTCCCGCCTTAGCGTGGGTGCTGTTCAACATTCTGCAGCCGGCGCTGAACCAGCTGAACCGCATGCGGAACAGCAAGGGGGTCATCGTTGGGCTTGGGCTTGGGCTCGGCGCCTCGGGCTTGATGTGGGGTCCGGAGGCGTCGGCGAGTGAGATGGGGCTGATTGCGGATGCTACGGCGGGGAGTGACAACAGGGGGCAGCTTCTGCTGTTTGTGGTTGCGCCGGCGATTGCGTGGGTTCTGTACAACATTCTGCAACCTGCACTGAATCAGCTTAACAGAATGAGATCAGAGTGA 588 0.5646 MAATIATSMAIVKTKSLNPKSPPSRPTLSLFSLHNLPKGLTPTVNINVSATKSSVAGTAIAGAIFSTLGNCDAAFAASQIAQIAEGDNRGLALLLPVVPALAWVLFNILQPALNQLNRMRNSKGVIVGLGLGLGASGLMWGPEASASEMGLIADATAGSDNRGQLLLFVVAPAIAWVLYNILQPALNQLNRMRSE 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01936 195 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 194 IPR038760 GO:0009523
Spst1g01936 195 Pfam Photosystem II protein Y (PsbY) 160 192 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Spst1g01936 195 Pfam Photosystem II protein Y (PsbY) 87 119 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Spst1g01936 195 Hamap Photosystem II protein Y [psbY]. 87 121 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01936 Spst-Chr1 27591134 27591721 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01936 K02723 - gmx:100814665 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01936 1 27591134 27591721 Spst1g01936 1 27591134 27591721 ECH
Spst3g01520 3 18651211 18651780 Spst1g01936 1 27591134 27591721 PCT