Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01509 ATGCTTCTAGAGTTGGAGACTTGGACTGCTTTGGTTGTTTTGTTTTTGCTTGTGTTGATTCTAAAGGAGTCGATCATGGGAGGTAATAGTTCGAAAGTGTCTGAAAGAAGGCGTGTTTCATCGTATGGATCTGCTGGTTCTTCAGCTTCATGGGATAACTATGGATACCCTCAGACACCAAATGCATACCCAGAACAAAATACATATCATACGCCTCTTCATAACCGTGCCTCGGCTCCATTTCATGACTATTCACAGCCAAAAAGGAGGTTGGATAGGAGATACTCCAGAATAGCTGATGATTACAATTCACTGGATGAGGTTACCACTGCTCTTTCTCACGCTGGACTGGAATCTTCTAACCTCATTGTTGGCATTGATTTTACAAAGAGCAACGAGTGGACAGGGAAGAGGTCATTCAACCGAAAGAGCTTACATCATATAGGAAGTGATCATAATCCTTATGAACAAGCAATCTCGATTATTGGGAAAACTTTAAGTGCTTTTGATGAGGATAACTTGATTCCTTGTTTTGGTTTTGGAGACGCATCAACGCATGATCAAGATGTCTTTAATTTCCATTCAGATGAGAGGTTCTGCAATGGATTTGAGGAAGTTCTGTCAAGATATAGAGATATTGTTCCTCGCCTACGTCTAGCAGGACCCACTTCATTTGCTCCTATTATTGAGATGGCTATGACTATAGTTGAGCAGAGTGGCGGCCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACGCAACATGGCCAGTTAAGTCCCCAGGAACAGAAGACCATTGATGCAATTGTAAAAGCCAGCGAGTATCCACTTTCAATAGTTTTGGTGGGGGTTGGAGATGGACCGTGGGACATGATGAGGGAATTTGATGATAACATTCCAGCGCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACCGAAATAATGTCAAGGAGTGTAGATTCAAGCAGAAAAGAAACAGACTTTGCTCTATCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACTATAGATCTTGGCATATTGGGTGCACGGAGGGGACATTCACCAGATAGGGTTGCTCTACCTCCACCTCATTATGAGAGGACTTCTAGCAGCAGCACATCTTTTCGTTCAAATAGTTTTCAGCAAAGTACACCTACATATTCAGGCTACGATAACGTTAACGCAGCATCATCTTCAGGTGGCTTATATGATAATAAGGTTTGTCCAATTTGTCTTACTAATGGGAAGGATATGGCATTTGGTTGCGGGCATCAGACTTGTTGTGAATGTGGAGAAAGCCTCGAATTCTGCCCCATATGCCGAAGCACAATCACTACCAGAATAAAGCTTTACTAG 1386 0.4199 MLLELETWTALVVLFLLVLILKESIMGGNSSKVSERRRVSSYGSAGSSASWDNYGYPQTPNAYPEQNTYHTPLHNRASAPFHDYSQPKRRLDRRYSRIADDYNSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSDHNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFNFHSDERFCNGFEEVLSRYRDIVPRLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSRSVDSSRKETDFALSALMEIPSQYKATIDLGILGARRGHSPDRVALPPPHYERTSSSSTSFRSNSFQQSTPTYSGYDNVNAASSSGGLYDNKVCPICLTNGKDMAFGCGHQTCCECGESLEFCPICRSTITTRIKLY 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01509 461 Pfam Zinc finger, C3HC4 type (RING finger) 415 456 - -
Spst3g01509 461 MobiDBLite consensus disorder prediction 375 394 - -
Spst3g01509 461 SUPERFAMILY vWA-like 121 303 IPR036465 -
Spst3g01509 461 PANTHER COPINE FAMILY PROTEIN 1 66 438 - -
Spst3g01509 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 461 IPR013083 -
Spst3g01509 461 MobiDBLite consensus disorder prediction 363 394 - -
Spst3g01509 461 SMART VWA_4 119 322 IPR002035 -
Spst3g01509 461 ProSiteProfiles Zinc finger RING-type profile. 418 451 IPR001841 -
Spst3g01509 461 Pfam Copine 144 357 IPR010734 -
Spst3g01509 461 SUPERFAMILY RING/U-box 412 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01509 Spst-Chr3 18537058 18541720 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01509 K16280 - gmx:100800161 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01509 3 18537058 18541720 Spst3g01509 3 18537058 18541720 ECH
Spst3g01509 3 18537058 18541720 Spst1g01948 1 27664910 27668915 PCT