Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01948 ATGATTGAAAACACTCTTCTTCTCTCTGTCATCATTGATTTGCAGTTCTGGTTGAAACTTGAAACAATGAATCCGGAGTTCAAAGTTATAGAGACTTGGACAGTTTGGGTTGCTATTCTGAGCATCTTGGTCTTTGTTGTGAAGGAGTTTGTTATGGGGGGGAAGAGCTCAAAAGAAAGTGGTAGGAGATATGATTTTGGTGCTTCTTCATCTTCATGGGATAATAATAACTATGGTGGATACCACCCACAAGCACCGTACCCTTCTTATCAAACTCCTCAGCACCAGCATGCATCAGCATCAACTCCTTTTCATGATTATGCTCAGCCAAAAAGGAAGTTGGATAAAAAGTATTCAAGGATAACTGATAATTACCGTTCCTTGGATGAGGTTACTGCTGCACTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGCTTGCATGACATTGGAAGTGGTCAAAACCCGTATGAGCAAGCAATTTCTATCATTGGGAAAACTTTATCTGCTTTTGATGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCGTCTACACATGATCAAGATGTATTTAGTTTCTATTCGGAAGATAGGTTCTGCAATGGATTTGAGGAAGTTCTATCACGATACAGACAAATTATTCCTGACCTCAAACTTGCAGGACCCACTTCATTTGCCCCTATTATTGAAATGGCTATGACTATTGTTGAGAAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCAGATGGACAGGTGACTCGCAGCGTTGATACACAACGTGGAAACTTAAGTCCACAAGAGAAGAACACGATAGATGCAATAGTTAAAGCAAGTGAGTATCCGCTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATCCCTTCTCGGGCATTTGACAATTTTCAGTTTGTGAATTTTACTGGAATAATGACGAGGAATGTAGATTCAACCAGAAAAGAGACAGATTTTGCCCTTTCAGCTCTGATGGAGATACCTTCTCAGTATAAGGCAACCATAGAGCTTGGCATATTGGGTGCACGGAGGGGACATTCACCAGATAGGGTTGCTCTACCCCCACCTCTTTATGGTAGGACTTCTTCCAGCATGAGCACAAAATCGACAAGGTCAAACAGTTTTCAGCAGAGGGCCCCTACATATACTAGCTATGATAGCAGTGTTCACACAGAGGCATCTGCAAGTTCTTTATATGATAATAAGGTTTGCCCGATTTGTCTTACCAATGCGAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGAGTGTGGAGAAGACCTGCAATTCTGTCCCATTTGCCGGAGCACAATCCACACCAGAATAAGGCTTTACTAG 1464 0.4167 MIENTLLLSVIIDLQFWLKLETMNPEFKVIETWTVWVAILSILVFVVKEFVMGGKSSKESGRRYDFGASSSSWDNNNYGGYHPQAPYPSYQTPQHQHASASTPFHDYAQPKRKLDKKYSRITDNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIGSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYSEDRFCNGFEEVLSRYRQIIPDLKLAGPTSFAPIIEMAMTIVEKSGGQYHVLLIIADGQVTRSVDTQRGNLSPQEKNTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTGIMTRNVDSTRKETDFALSALMEIPSQYKATIELGILGARRGHSPDRVALPPPLYGRTSSSMSTKSTRSNSFQQRAPTYTSYDSSVHTEASASSLYDNKVCPICLTNAKDMAFGCGHQTCCECGEDLQFCPICRSTIHTRIRLY 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01948 487 Pfam Copine 167 380 IPR010734 -
Spst1g01948 487 MobiDBLite consensus disorder prediction 87 103 - -
Spst1g01948 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 487 IPR013083 -
Spst1g01948 487 MobiDBLite consensus disorder prediction 399 418 - -
Spst1g01948 487 SUPERFAMILY RING/U-box 437 483 - -
Spst1g01948 487 SMART VWA_4 142 345 IPR002035 -
Spst1g01948 487 SUPERFAMILY vWA-like 143 326 IPR036465 -
Spst1g01948 487 MobiDBLite consensus disorder prediction 387 418 - -
Spst1g01948 487 ProSiteProfiles Zinc finger RING-type profile. 444 477 IPR001841 -
Spst1g01948 487 PANTHER COPINE FAMILY PROTEIN 1 94 464 - -
Spst1g01948 487 MobiDBLite consensus disorder prediction 84 104 - -
Spst1g01948 487 Pfam Zinc finger, C3HC4 type (RING finger) 441 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01948 Spst-Chr1 27664910 27668915 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01948 K16280 - gmx:100798816 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01509 3 18537058 18541720 Spst1g01948 1 27664910 27668915 PCT