LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g01476	ATGGGTGGTGGTGGTAGAGGAGGCAGGTCCCGCACTCAAAGAAAGCATTTCCGCCAGAACAGAGAGAACGTGTGGAAGCGTTCCAAATCGGATCCCGATCCTTCTTCAACAGAGAACAATACTTCGTGGACTCCTTTCGCCACCGAGAACGCTGCTTTCGATTTCTACTACAAAGAGCAGGGAATAGTCGACCCCCAACAGTGGGAACAATTCGTCGCTGTTCTCCGAACTCCATTACCCGCAACCTTCAGAATCAACTCTAGTAGCCAGTTTTCCGACGACATTCGTTCTCAATTGGAGTATGATTTCGTGCATTCTCTTCGCGACGAGGTTGCTGAAGGGGTTGAGACTGAGGCTATTCGGCCATTGCTGTGGTACCCTGGGAATTTCGCTTGGCATTCAAATTTTTCTAGGATGCAACTTAGGAAGAATCAAACTCTTGAGAGGTTCCATGAATTTTTAAAGCTAGAAAACGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCACTCAGATCATTTTGTGCTTGACATGTGTGCTGCACCAGGCTCAAAAACATTTCAATTGCTTGAGATTATACACCAATCAAGTAAAGCAGGATCGCTGCCTGATGGGATGGTTATAGCAAATGATCTTGATGTCCAAAGATGCAATCTTCTTATTCACCAAACAAAGAGAATGTGCACAGCCAATCTAATTGTTACAAATCATGAAGCGCAACACTTCCCAGGATGCCGATTAAACAGGAATTATGAAAGGATTAAGTTAGATCACAATATTGGCCAACTATTATTTGATCGTGTTCTTTGTGATGTCCCATGCAGTGGAGATGGTACCCTTCGTAAGGCACCTGATCTCTGGAGAAAATGGAACACGGGGATGGGACATGGCCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTGATTTTCAATTCTGTTCTATAATGGATAGTTTGGTGCCTTCCGTCACTGGTCTTGCGGTTTTGTTTCCGTATATGGACAGAATACATTTACTCAAAATTGGTGGAAGAATGGTTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCTGAGGTTTTGCGAAGGTGTGGAGGGTCTGTTAAACTTGTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGTCGACCTGGTCTCAAGAAATGGAAGGTATATGACAAGGGCTCTTGGTTGGTCTCTTATAATAATGTTCCTAAGTTTCGTAGGAGTGTAATTCTTTCCAGTATGTTTCCTTCTGGAAGAGGTCATCATGATGCTGTTGATAGTAGTTGTAATGTTAACGTAGAAGAGGTTACTAATGGTGTTAATGGAAATGCTGGAGATGGTGTTCAACCAGTACAGAATCCTGTGATCTCTGAATCTGTTGAAGAAGTTTCCGATTTCCCTCTAGAGCATTGCATGAGGATATTGCCTCATGATCAGAACACTGGAGCCTTCTTCGTTGCTGTTCTGCAAAAAGTTTCTCCTTTGCCAGTATTTTCAGAAAAAACAAAATTAAAAATTGATGAGCAATATGAAGAACCAGCAAACCAGAGTCTCAATGATGCACAAGTACAACAGATCACTTCACCAGAATATGCACACGAAGAAAATTTGAAAGAAGCTTCAGAGGAAAATTTAGATGACAATGAACCCAATACTGAAGATATGGAAGATGATCCCGTTACATGTGAAGAACATAGTGCCAAGGAAACTCACGTGGCTGATAATGTGCAAAACATAACGAAGAGGGTTCCAGAAAAAAGAAAACTACAAATTCAAGGAAAATGGAGGGGTGTTGACCCTGTTGTCTTTTTCAAAGATGAAACAATTATTAATAGCATAAGGGATTTTTATGGAATTAATGAGCGTTTTCCATTCAATGGTCACCTTGTTACAAGAAACAGTGATACAAATCATGTGAAAAGAATTTATTATATCTCCAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCAAAGTGGGGCAACAACTTAAAATAACCTCAGTTGGCCTGAAGATGTTTGAAAGACAAACAGCACGAGAAGGTAGCTCTGCACCATGTGCTTTCCGGATATCATCTGAAGGATTGCCCCTTGTTCTCCCATATATAACCAAACAGATTTTGCATGCATCTCCCGCAGACTTTAAGCATCTTCTGCAGAACAAAGAAGTAAAATTTGAAGATTTTACTGATCCCAAATTTGGTGAAAAGGCAGCAAACCTATTGCCAGGCTGTTGTGTGGTAATTCTGAGTATAGGAAATACAGTTGCTGTAGAGTCTCTCCAAGTGGATGAGTCAACGATAGCCATTGGATGCTGGAAGGGTAGGGCGAGATTGTCTGTGATGGTTACTGCAATGGACTGCCAAGAACTACTTGAAAGGCTTCTGATACGTTTTGACAATGTCAATGCTTCAGCTGGGCATGTCGACGAATCCTCTAATGATGAGAAAGAAATACAACCTGTGCAAGCGTTCAACGGTAAAAATGATGACAATGATGGTGGAACGCGCTGA	2562	0.4169	MGGGGRGGRSRTQRKHFRQNRENVWKRSKSDPDPSSTENNTSWTPFATENAAFDFYYKEQGIVDPQQWEQFVAVLRTPLPATFRINSSSQFSDDIRSQLEYDFVHSLRDEVAEGVETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSSKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYERIKLDHNIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHSLQVLIAMRGDFQFCSIMDSLVPSVTGLAVLFPYMDRIHLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVKLVDVSSELPQLIRRPGLKKWKVYDKGSWLVSYNNVPKFRRSVILSSMFPSGRGHHDAVDSSCNVNVEEVTNGVNGNAGDGVQPVQNPVISESVEEVSDFPLEHCMRILPHDQNTGAFFVAVLQKVSPLPVFSEKTKLKIDEQYEEPANQSLNDAQVQQITSPEYAHEENLKEASEENLDDNEPNTEDMEDDPVTCEEHSAKETHVADNVQNITKRVPEKRKLQIQGKWRGVDPVVFFKDETIINSIRDFYGINERFPFNGHLVTRNSDTNHVKRIYYISKSVKDVLELNFKVGQQLKITSVGLKMFERQTAREGSSAPCAFRISSEGLPLVLPYITKQILHASPADFKHLLQNKEVKFEDFTDPKFGEKAANLLPGCCVVILSIGNTVAVESLQVDESTIAIGCWKGRARLSVMVTAMDCQELLERLLIRFDNVNASAGHVDESSNDEKEIQPVQAFNGKNDDNDGGTR	853

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g01476	853	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	132	153	IPR023270	GO:0016428
	Spst3g01476	853	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	680	692	IPR023270	GO:0016428
	Spst3g01476	853	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	387	406	IPR023270	GO:0016428
	Spst3g01476	853	MobiDBLite	consensus disorder prediction	551	575	-	-
	Spst3g01476	853	MobiDBLite	consensus disorder prediction	17	33	-	-
	Spst3g01476	853	Pfam	16S rRNA methyltransferase RsmB/F	347	387	IPR001678	GO:0008168
	Spst3g01476	853	Pfam	16S rRNA methyltransferase RsmB/F	176	302	IPR001678	GO:0008168
	Spst3g01476	853	MobiDBLite	consensus disorder prediction	1	43	-	-
	Spst3g01476	853	ProSitePatterns	NOL1/NOP2/sun family signature.	275	286	IPR018314	GO:0003723\|GO:0008168
	Spst3g01476	853	MobiDBLite	consensus disorder prediction	823	853	-	-
	Spst3g01476	853	Gene3D	Vaccinia Virus protein VP39	50	414	IPR029063	-
	Spst3g01476	853	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	55	509	IPR029063	-
	Spst3g01476	853	PRINTS	RNA (C5-cytosine) methyltransferase signature	276	288	IPR023267	GO:0001510
	Spst3g01476	853	PRINTS	RNA (C5-cytosine) methyltransferase signature	491	508	IPR023267	GO:0001510
	Spst3g01476	853	PRINTS	RNA (C5-cytosine) methyltransferase signature	186	196	IPR023267	GO:0001510
	Spst3g01476	853	PRINTS	RNA (C5-cytosine) methyltransferase signature	353	369	IPR023267	GO:0001510
	Spst3g01476	853	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	13	319	IPR023267	GO:0001510
	Spst3g01476	853	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	71	509	IPR001678	GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g01476	Spst-Chr3	18247532	18254790	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g01476	K15334		-	gmx:100808859	1441.79

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst3g01476	3	18247532	18254790	Spst3g01476	3	18247532	18254790	ECH
	Spst3g01476	3	18247532	18254790	Spst1g01978	1	27918206	27929269	PCT