Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01978 ATGGGGAGGGGAAATGGAGGGAAGAGTCGCACTCAACGAAAGCATTTCCAAGAGAGCAGAGAGAACGTGTGGAAATTCAAACGTGCTAGATCAGATTCAGATCCTATTCCTTTCACCAACCCCTACGCTACTCAGAACCTTGCTTTCGATCACTATTACAAGGAACAGGGAATTGTGTCATCGCAAGAATGGGATGCTTTCGTGCAACTTCTTCGAACTCCTTTGCCCGCAGCATTCAGAATCAATTCCACTAGCCGGTTTTGTGCGGATATTCGGTCCCAACTAGAGAATGATTTTGTGCAGTCTATTCAGGCTGAGGTTGTGGACGGGGATGATACGGAGGCTATTATACCTTTGCCATGGTATCCTGAGAATCTTGCTTGGCATTCAAATTTTTCGCGTAAGCAGCTCAGGAAGAATCAAACACTTGGGAGGTTTCATGAGTTCTTAAAGCTTGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGATAGCTGGATGGCTTAGTGCATGTACTTTACTCTATGAGCTTACCTTTCGAGAATTTAACTTGTGCACACAAATGTTTATTTGCTACACAGTGTGTGCAGCGCCAGGTTCAAAAACATTTCAATTGCTTGAGGTTTTACACCATTCCACTAAAGTGGGATATCTGCCTGATGGAATGGTTATAGCAAACGATCTAGATATCCAAAGGTGTAATCTTCTCATTCACCAAACCAAAAGGATGTGCACAGCCAACCTAATTGTCACCAATCATGAAGCTCAACACTTCCCAGGATGTCTCTTGAATAAAAATTATGATAAAATGGAGCTAGATCGACAAGCCCAGTTATTATTTGACCGTGTTCTGTGTGATGTCCCATGCAGCGGAGATGGCACCCTTCGTAAGGCCCCTGATCTCTGGAGGAAATGGAACACAGGAACTGGAAATGGGCTTCATAACCTACAAGTTTTAATTGCTATGCGAGGTGCATCATTGCTTAAAGTTGGAGGAAGAATGATTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCTGTTGTTGCTGAGCTTTCTGCGGTTGAGGTTGTGGGTTGTGGTTATGAAGGAAAAACTCCATCTGTTTTGCGAAGGTGTGGAGGGTCCATTGAACTTGTAGATGTCTCTAGTGAGCTTCCCCAACTTATTCGTAGACCAGGCCTTAAGAGTTGGAAGGTATGCGACAAGGGCAAGTGGTTCATCTCTTGCAAAGATGTTCCCAAGTTTCGCAGAAATGTAGTTCTTCCTAGCATGTTTCCAAATGGCGGAATCTATCAGGATGATGTTGACAGTAATTGTAATATTAACATTAAAGGTGATATTAATGCTGATGTTGTTAATGGACATTCTGAAGATGATGTTCAAGCAGTGGATAATCCTGTGATGCACGAATTTGCTGGGGAAGTTTCTGATTTCCCACTAGAGCAGTGCATGAGGTTTGTGCCTCATGATCAGAATACCGGAGCATTCTTTATTGCTGTATTGCAGAAAGTTTCTCCTCTGCCTGCAATCCAGGTAAAACCTAGAAAAGAAGTTGGGAAACAGGTTGACGCAGCAAACCAAGGCAACGATGATGCACAAGAACTTCCTGTTAATCCATTGAAAGTTAATTCTGTTACATGTGGAAAAGTAGATTTCAAGGAAGCCGAAGATCCCTGCAATGTAGAAAACATACCAAAGAATACTCCAGGCAAAAGGAAACTGCAGTTTCAAGGCAAATGGAGAGGCATTGACCCTGTGGTCTTCTTCAATGACGATGTAGTTATTAACAGCATAAAGACATTTTATGGTATTGATGATCAGTTTTCACTCGATGGTCACCTTGTAACAAGAAACAGTGATACAAACCACGTGAAAAGAATTTACTATATCTCCAAGTCAGTCAAAGAGGTTCTGGAGTTGAACTTCTCAGTGGGACAGCAACTTAAAATAACTTCTGTTGGACTGAAGATTTTTGAAAGACAAACGTCATGTGAAGGAAGGTCTGCACAATGTGCTTTCCGGATCACTTCTGAAGGATTGCCTCTTATTCTCCCTCACATCTCCAAACAGATTCTACGTGCATCTGCCATAGATTTCAAGCATCTTCTGCAGTATAGAGCTGTAAAATTTGCAGATTTTGTGGATGCCAAGTTTGGCGAAAGTGCTGCAAGCCTAATGCCCGGCTGTTGCGTGGTAGTTCTGGGTGAAGGGAGCAGAGCTGCTACAGCGACCCTCCAAGTGGACGAGTCAACAATAGCAATTGGATGCTGGAAGGGTAGAGCAAGTTTGACTGTGATGGTAGGTGCATTGGAATGCCAGGAACTGCTAAAAAGGCTTTTGATGCGTCTAGATACTGTAACAGAAAAGGACTTCTGCATGCGTGAGGACCAACCGTCTGATATTAAGGGAGATGAATCACAAGAGTCAAACGGTAAAAATGATGATGTGAAAGTTACTGAGTGTTAA 2484 0.4255 MGRGNGGKSRTQRKHFQESRENVWKFKRARSDSDPIPFTNPYATQNLAFDHYYKEQGIVSSQEWDAFVQLLRTPLPAAFRINSTSRFCADIRSQLENDFVQSIQAEVVDGDDTEAIIPLPWYPENLAWHSNFSRKQLRKNQTLGRFHEFLKLENEIGNITRQEAVSMIAGWLSACTLLYELTFREFNLCTQMFICYTVCAAPGSKTFQLLEVLHHSTKVGYLPDGMVIANDLDIQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCLLNKNYDKMELDRQAQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQVLIAMRGASLLKVGGRMIYSTCSMNPIENEAVVAELSAVEVVGCGYEGKTPSVLRRCGGSIELVDVSSELPQLIRRPGLKSWKVCDKGKWFISCKDVPKFRRNVVLPSMFPNGGIYQDDVDSNCNINIKGDINADVVNGHSEDDVQAVDNPVMHEFAGEVSDFPLEQCMRFVPHDQNTGAFFIAVLQKVSPLPAIQVKPRKEVGKQVDAANQGNDDAQELPVNPLKVNSVTCGKVDFKEAEDPCNVENIPKNTPGKRKLQFQGKWRGIDPVVFFNDDVVINSIKTFYGIDDQFSLDGHLVTRNSDTNHVKRIYYISKSVKEVLELNFSVGQQLKITSVGLKIFERQTSCEGRSAQCAFRITSEGLPLILPHISKQILRASAIDFKHLLQYRAVKFADFVDAKFGESAASLMPGCCVVVLGEGSRAATATLQVDESTIAIGCWKGRASLTVMVGALECQELLKRLLMRLDTVTEKDFCMREDQPSDIKGDESQESNGKNDDVKVTEC 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01978 827 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 386 405 IPR023270 GO:0016428
Spst1g01978 827 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 128 149 IPR023270 GO:0016428
Spst1g01978 827 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 654 666 IPR023270 GO:0016428
Spst1g01978 827 MobiDBLite consensus disorder prediction 1 21 - -
Spst1g01978 827 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 44 417 - -
Spst1g01978 827 PRINTS RNA (C5-cytosine) methyltransferase signature 196 206 IPR023267 GO:0001510
Spst1g01978 827 PRINTS RNA (C5-cytosine) methyltransferase signature 285 297 IPR023267 GO:0001510
Spst1g01978 827 PRINTS RNA (C5-cytosine) methyltransferase signature 492 509 IPR023267 GO:0001510
Spst1g01978 827 PRINTS RNA (C5-cytosine) methyltransferase signature 335 351 IPR023267 GO:0001510
Spst1g01978 827 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 12 793 IPR023267 GO:0001510
Spst1g01978 827 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 510 IPR029063 -
Spst1g01978 827 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 198 510 IPR001678 GO:0008168
Spst1g01978 827 Gene3D Vaccinia Virus protein VP39 44 416 IPR029063 -
Spst1g01978 827 MobiDBLite consensus disorder prediction 802 827 - -
Spst1g01978 827 Pfam 16S rRNA methyltransferase RsmB/F 197 356 IPR001678 GO:0008168
Spst1g01978 827 ProSitePatterns NOL1/NOP2/sun family signature. 284 295 IPR018314 GO:0003723|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01978 Spst-Chr1 27918206 27929269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01978 K15334 - gmx:100808598 1296.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01476 3 18247532 18254790 Spst1g01978 1 27918206 27929269 PCT