Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01419 ATGGCGAACACTCTACACAGTGGCACCAAATGCCGAATCCCTTTACGCGACCAATCCCTGCCCTTCTCTCGCCATGTTTCAAGATCCCTCTCTTTCCTACCCAAAACACGTGCGGGAAAACAACCAAACAACACCTTCGCGGTAAAGGCTTCGCACTCTGACTTCCACGTTGACCCTTCGCTCAGTCCACGTGTCAATGCCGTCAAGCCTTCCAAAACCGTCGCCATCAGTGACCTTGCCACCGCCCTCGTCCAAGCCGGCGTTCCCGTCATTCGCCTCGCCGCCGGCGAGCCCGATTTCGACACGCCCGCTCCCATCGCCGAGGCTGGGATTAATGCAATTCGCGAAGGTTACACGAGGTACACGCCCAATGCCGGAACCGGGGAACTGCGTCAAGCGATTTGTCGTAAGCTGAAAGAGGAAAATGGGATTACTTACACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAACAGAGTATTGCTCAAGCAGTGCTTGCAGTTTGCTCCCCTGGAGATGAGGTCATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCAACACCTGTGATTCTTCCAACATCCATATCTGATAATTTCCTTTTAGATCCGAAAATCCTTGAATCCAAAATTACTGAAAGATCGAGACTGCTTATTCTTTGCTCGCCATCTAACCCAACAGGATCTGTCTACCCTAAGGAATTACTTGAAAAGATAGCCCAGATTGTTGCAAAGCACCCAAGGCTTCTGGTCCTCTCTGATGAAATTTATGAACACATCATTTATGCACCAGCAACTCACGTAAGCTTTGCATCTTTACCGGGAATGTGGGACAGAACTCTAACTGTAAATGGATTTTCTAAGGCCTTTGCAATGACTGGTTGGCGGCTTGGTTATATTGCTGGTCCAAAACATTTTGTTGCGGCATGTGGAAAGATCCAAAGTCAGTTCACTTCAGGGGCCAGCAGTATTGCCCAGAAAGCTGCAGTTGCTGCATTAGGACTAGGTTATGCTGGTGGGGAGGCAGTTTCTACCATGGTGAAAGCATTTAGAGAGCGAAGGGATTTCTTGGTAAAAAGTTTTAGAGAAATAGATGGTGTCAAGATATCCGAACCCCAGGGAGCATTTTATCTATTCATTGATTTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTCGGTAAAATTGAGGACTCCGAGTCCCTCTGTCGATATCTACTGGATGTGGGCCAGGTAGCCTTGGTGCCAGGGAGTGCATTTGGAGATGATACTTGCATCCGCATCTCTTATGCTGAATCCATTACTACTCTTCAGGCAGCTGTAGAAAGAATTAAAAAAGCACTCGTCCCTCTGAGCTCTACCGCACTTGTTTAA 1395 0.4781 MANTLHSGTKCRIPLRDQSLPFSRHVSRSLSFLPKTRAGKQPNNTFAVKASHSDFHVDPSLSPRVNAVKPSKTVAISDLATALVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGYTRYTPNAGTGELRQAICRKLKEENGITYTPDQVVVSNGAKQSIAQAVLAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTSISDNFLLDPKILESKITERSRLLILCSPSNPTGSVYPKELLEKIAQIVAKHPRLLVLSDEIYEHIIYAPATHVSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGYAGGEAVSTMVKAFRERRDFLVKSFREIDGVKISEPQGAFYLFIDFSFYYGREAEGFGKIEDSESLCRYLLDVGQVALVPGSAFGDDTCIRISYAESITTLQAAVERIKKALVPLSSTALV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01419 464 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 292 305 IPR004838 GO:0003824|GO:0009058|GO:0030170
Spst3g01419 464 Pfam Aminotransferase class I and II 89 451 IPR004839 GO:0009058|GO:0030170
Spst3g01419 464 Gene3D Aspartate Aminotransferase, domain 1 74 449 IPR015422 GO:0003824
Spst3g01419 464 FunFam Aspartate aminotransferase 120 342 - -
Spst3g01419 464 PANTHER ASPARTATE AMINOTRANSFERASE 60 455 - -
Spst3g01419 464 SUPERFAMILY PLP-dependent transferases 61 455 IPR015424 -
Spst3g01419 464 CDD AAT_like 91 453 - -
Spst3g01419 464 Gene3D - 120 342 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01419 Spst-Chr3 17676774 17680198 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01419 K15849 - gmx:100776446 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01419 3 17676774 17680198 Spst3g01419 3 17676774 17680198 ECH
Spst3g01419 3 17676774 17680198 Spst1g02015 1 28390033 28404007 PCT