Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02015 ATGCCACTCACCAGCATGAAGAAGGAAGAATCACTGGTAATAGCTGCTCAACCATTCGACAGTGAATTCATTCCTGCTGATCATGCTATGGGATATCCAGTATGTTGCCTGGAGAATAGGCTATTACCTGAAGAAAAAGACATCATCCCCTGGGCTCTGCTTCTGCTTCTTTCCAATACTCGTATAACACTTAGTCAACTCTACACCTCCAACCCCATTTTACTCTGCCTCTTCTTAAATATTTTCCTTCTTTACTTGGTGTATCCAACTACACTTGTGATTTCCATGGCCAATGCGCTGCATATCGCCGCTATGTCTTGTTGTGATTTTCCATCCCTATCCACTCTTCCTCTCAGAGCCATGCATAAAGGAAAACATATTAAGCTGAACAGAATGGCTGTGGTGATAAAGGCAAAGACTAATTGCGAATTTGATGACAAAGACGTTGATATTTCTTTGAGTCACAGAGTTGATGCCGTGAAACCGTCCAAAACTCTAGCTATATTTGATGATGCCACTGCTCTTTTACAATCTGGAGTTCCTGTTATTCGCTTATCTTGTGGAGAATCTGATTTTGACACACCCGCTGTGATAGCTGAGGCTGGGATGAATGCAATTCGTGATGGTTACACGAGATACACCCCCAATTCTGGAACATTAGAATTGCGCCAAGCAATATGTCACAAGCTAAAAGAGGAGAATGGAATTACTTATTCTCTTGATCAGATTGTGGTCAGTAATGGAGCCAAGCAAAGTATCGTTCAAGCAGTGCTTGCAGTTTGTTCCCCAGGAGACGAGGTTATTATTCCAGCTCCATTCTATGTGAGTTACCCAGAAATGGCAAGACTGGCTCATGCAACACCTGTGATTCTTCCAACCCACATATCGAACAATTTTATCTTGGACCCCAAACTGCTAGAAGCCAACCTGACCGAAAGATCCAGACTTCTTATTCTTTGTTCACCATGTAACCCAACAGGATCTGTCTATCCTAAGAAATTACTTGAAGAGATAGCCCAAATTGTAGCAAAGCACCCCAGGCTTCTGGTTCTTTCCGATGAAAATTATGAACACATGATATATGCACCAGCAACTCATACAAGCTTTGCATCTATAACTGGAATGTGGGACAGAACTCTAACTGTGAATGGACTTTCCAAGACATTTGCAATGACTGGTTGGCGGCTTGGGTATATTGCTGGTCCAAAGCATTTTGTTGCAGCATGTGCAAAGATTCAAAGCCAGTTCACATCAGGGGCAAGTAGTATATCTCAGAAAGCTGGGGTTGCTGCGTTAGGATTAGGCTATGCTGGCGGGGAAGCTGTTTCTACCATGGTGAAAGCTTTCAGGGAAAGAAGGGATTTCTTGGTTGAAAGCTTTAGAGATATGGGTGGTGCCAAAATATGTGAACCACAGGGAGGATTCTATGTATTCATTGATTTCAGCTCTTATTATGGAAGAGAAGCAGAAGGGTTCGGTTTAATTGAAAATTCTGACTCCCTCTGTCACTATCTGCTGGACAAGGGCCAGGTTGCTTTGGTTCCGGGGAGTGCATTTGGAGATGATAATTGCATCCGCATCTCCTTTGCAGAATCCCTTACTACTTTAAAGATAGCAGTAGAGAGAATTAAGAAAGCACTCATCCCTCTAAGCTCTTCTGCAGCCATGCAGAAAGGAAATCACGTGGAGCTGAACAAAAGGGTGGTAGTGATAAAGGCAAAGAATAAGAGTGATTCTGCTGACATAGAAGTTGATGTTTCTTTGAGCCACAGAGTTAATGCTGTGAAACCTTCCAAAACTATGGCCATAAGTGATCATGCCACTTCTCTTTTACAAACTGGAGTCCCGGTTATTCGTTTAGCTGCTGGAGAACCTGATTTTGACACACCCGCTGTTATAGCTGAGGCTGGGATGAATGCAATTCGTGATGGTTACACGAGATATACTCCTAATGCTGGAACCTTAGAATTACGCCAAGCAATTTGTCACAAGTTAAAAGGAGTTGAAAAATGTCACATGACTGTTTCTGCAGAGGAGAATGGAATTACATATACTCCCGATGAGATTGTGGTCAGCAATGGAGCGAAGCAGAGTGTTGTTCAAGCAGTGCTTGCAGTTTGTTCCCCAGGAGATGAGGTTATTATTCCAGGTCCATTCTATGTGAGTTATCCAGAAATGGCAAGACTAGCGGATGCAATTCCTGTGATTATTCCAACCCACATATCTAATAACTTTCTATTGGATCCGAAACTGCTAGAAGCCAACATTACCGGCAGATCAAGACTACTTATTCTTTGTTCACCGTGTAACCCAACAGGCTCTGTCTACTCTAAGAAATTACTTGAAGAGATAGCCCAAATTGTAGCAAAGCACCCCAGGCTTCTGGTTATCTCTGATGAAATTTATGAACACATAATTTATGCACCAGCAACTCACACAAGCTTTGCATCTTTACCTGGAATGTGGGACAGAACTCTAACGGTGAATGGGTTTTCCAAGACATTTGCAATGACTGGTTGGCGTCTTGGGTATATTGCTGGTCCAAAACATTTTGTTGCAGCTTGTGGAAAGATTCAAAGTCAGTTCACTTCAGGGGCAAGCAGCATATCTCAGAAAGCTGGCGTTGCCGCATTAGGACTAGGCTATGCAGGTGGGGAGTCTGTTTCTACCATGGTGAAAGCATTTAGGGAAAGAAGGGATTTCTTGGTTGAAAGCTTTTCAAAAATGGATGGTGTGAAAATATCTGAACCACAGGGGGCATTTTATCTATTCATTGATTTCAGCTCTTATTATGGCAGAGAAGCTGAAGGGTTTGGTTTAATTCAGAATTCTGACTCCCTCTGTCTATACCTGCTGGACAAGAGCCTGGTTGCACTGGTGCCGGGAAGTGCATTTGGGGATGATAGTTGCATCCGCATTTCTTATGCAGAATCCCTTCCTACTTTAAAGATAGCGGTAGAGAGAATTAAAAAAGCACTTATCCCTCTAAGCTCTGCTGCGCTTGTTTGA 3009 0.4284 MPLTSMKKEESLVIAAQPFDSEFIPADHAMGYPVCCLENRLLPEEKDIIPWALLLLLSNTRITLSQLYTSNPILLCLFLNIFLLYLVYPTTLVISMANALHIAAMSCCDFPSLSTLPLRAMHKGKHIKLNRMAVVIKAKTNCEFDDKDVDISLSHRVDAVKPSKTLAIFDDATALLQSGVPVIRLSCGESDFDTPAVIAEAGMNAIRDGYTRYTPNSGTLELRQAICHKLKEENGITYSLDQIVVSNGAKQSIVQAVLAVCSPGDEVIIPAPFYVSYPEMARLAHATPVILPTHISNNFILDPKLLEANLTERSRLLILCSPCNPTGSVYPKKLLEEIAQIVAKHPRLLVLSDENYEHMIYAPATHTSFASITGMWDRTLTVNGLSKTFAMTGWRLGYIAGPKHFVAACAKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMVKAFRERRDFLVESFRDMGGAKICEPQGGFYVFIDFSSYYGREAEGFGLIENSDSLCHYLLDKGQVALVPGSAFGDDNCIRISFAESLTTLKIAVERIKKALIPLSSSAAMQKGNHVELNKRVVVIKAKNKSDSADIEVDVSLSHRVNAVKPSKTMAISDHATSLLQTGVPVIRLAAGEPDFDTPAVIAEAGMNAIRDGYTRYTPNAGTLELRQAICHKLKGVEKCHMTVSAEENGITYTPDEIVVSNGAKQSVVQAVLAVCSPGDEVIIPGPFYVSYPEMARLADAIPVIIPTHISNNFLLDPKLLEANITGRSRLLILCSPCNPTGSVYSKKLLEEIAQIVAKHPRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKTFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSISQKAGVAALGLGYAGGESVSTMVKAFRERRDFLVESFSKMDGVKISEPQGAFYLFIDFSSYYGREAEGFGLIQNSDSLCLYLLDKSLVALVPGSAFGDDSCIRISYAESLPTLKIAVERIKKALIPLSSAALV 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02015 1002 CDD AAT_like 183 545 - -
Spst1g02015 1002 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 830 843 IPR004838 GO:0003824|GO:0009058|GO:0030170
Spst1g02015 1002 Pfam Aminotransferase class I and II 616 989 IPR004839 GO:0009058|GO:0030170
Spst1g02015 1002 Pfam Aminotransferase class I and II 181 543 IPR004839 GO:0009058|GO:0030170
Spst1g02015 1002 SUPERFAMILY PLP-dependent transferases 588 993 IPR015424 -
Spst1g02015 1002 Gene3D Aspartate Aminotransferase, domain 1 166 541 IPR015422 GO:0003824
Spst1g02015 1002 Gene3D Aspartate Aminotransferase, domain 1 601 987 IPR015422 GO:0003824
Spst1g02015 1002 FunFam Aspartate aminotransferase 647 880 - -
Spst1g02015 1002 PANTHER ASPARTATE AMINOTRANSFERASE 586 993 - -
Spst1g02015 1002 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 384 397 IPR004838 GO:0003824|GO:0009058|GO:0030170
Spst1g02015 1002 FunFam Aspartate aminotransferase 212 434 - -
Spst1g02015 1002 SUPERFAMILY PLP-dependent transferases 153 547 IPR015424 -
Spst1g02015 1002 CDD AAT_like 618 991 - -
Spst1g02015 1002 Gene3D - 647 880 IPR015421 GO:0003824
Spst1g02015 1002 Gene3D - 212 434 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02015 Spst-Chr1 28390033 28404007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02015 K15849 - gmx:100780254 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02015 1 28390033 28404007 Spst1g02015 1 28390033 28404007 ECH
Spst3g01419 3 17676774 17680198 Spst1g02015 1 28390033 28404007 PCT