Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01325 ATGGCTACTTCCCCACATCCCCTTGAAGGGAGACACCGTTTTCCACCATCCATTGTAGATTTATACAGACGAAGATTACCAAAAGGTAATGCCAAAGATGCTGAGAATGAGAAGCCTATCCAATTATCCATCAAAGATAGAAGCTCAAGATGCAACTTTTCTCTCTTAAAACCTTTTCTCCTATTCATAACCGTTTGCGGCACTTATGTAATGCTTCTGCATTCGAAGGTTTACAGCAGCAACCATTTATCAAGCTTTGGCTCTGGGCCAAATTTTGTGAACAGGTGGATATGGAGTGGACCAGATCCTCGGTATGCATCGAATGTAGATATTAACTGGGATGATATACTACATATTACAGAGAAACTGACAGGCAAAAATGAATTTCAAGGGATTGGTCTTCTCAACTTCAATAAGACTGAATTAGACCATTGGGAACAGCTAATACCTAATGTTGCACATGTTGTTCTGGACCTAGAGTATGCTGCAAAAAATGTGACATGGGAATCCCTATACCCAGAATGGATTGATGAGGAAGAAGAAACCAAAGTTCCGATTTGTCCTTCTCTTCCATCTCTCAGATCTCCGGGAATAAGGCTGAATCTCATAGCTGTGAAGCTTCCTCATGCCAATTGGGGCATTTGGTCTAGAGATGTTGCTAGGTTGCACTTGCAGCTAGCTGCAGCTAGGCTTGCAGCCTCTCTTAAAGGAAATTACCCCGTATATGTGCTTTTCATTACCAAATTCTTTCCAATACCCAATTTGTTTACCTGCAAAGAACTTGTGGAACATGAAGGGAATGTATGGTTGTACCGGCCACACTTGATTGTTTTGAGAGAAAAACTCCAGCTCCCGGTAGGGTCATGTGAACTTTCACTTCCTTTGAGGGACAAAGAGCTGATTTACGCGGGAAATGTTCGTACGGAAGCATATGCAACTATTCTCCATTCAGCTCACGTTTATGTTTGTGGAGCTATTGCTGCTGCACAAAGCATTCGCATGTCTGGATCAACTCGAGACCTAGTTATACTAGTTGATGAGACAATAGGTGAGTACCACAGAAGTGGTTTAGAAGCAGCAGGGTGGAAAATTAGGACAATACAAAGGATCAGAAACCCAAAAGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAGTTTCGTTTGTGGCAGCTTACAGATTATGACAAGATAGTATTCATTGATGCAGATTTGCTCATTCTAAGAAATATAGATTTCCTATTTGGAATGCCAGAAATTACTGCAACAGGAAATGATGCCACACTTTTTAACTCAGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCAAGCTCCTAATGGATCATATTAATGAGTTTGACTCCTACAATGGAGGGGATCAGGGATACTTAAATGAAATATTTACATGGTGGCACAGGATGCCAAGACACATGAACTTTTTGAAGCATTTTTGGGTTGGAGATGATGAAGAGACGAAGCAAATGAAGTCTTTGTTATTTGGTGCTGACCCTCCAATTCTCTATGTCCTTCACTATCTAGGAATGAAGCCGTGGTTGTGCTTCCGGGACTACGATTGTAACTGGAATGCCGACATCTTTCACGAGTTTGCAAGTGATGTCGCTCATGAAAGGTGGTGGAAGGTGCATGATGCAATGCCTAAGCTTTTGCAACAGTTTTGCATGTTGAAGTCCAAGCAGAAGGCCCAGCTGGAATGGGATCGTAGGCAAGCTAAAACTGCAAACTACTCAGATGGGCATTGGCGAATTAAAGTTAAAGATAAAAGGTTGAAGAAATGCATAGATAACTTGTGTTCATGGAAAAACATGTTGAAGAATTGGGGAGAAACCAATTGGACTGATGATGATGAGTCTTACTATACTCCAACACCACCTGCCATTACCACAGCATCCCTTTCTAATTTGTGA 1932 0.4151 MATSPHPLEGRHRFPPSIVDLYRRRLPKGNAKDAENEKPIQLSIKDRSSRCNFSLLKPFLLFITVCGTYVMLLHSKVYSSNHLSSFGSGPNFVNRWIWSGPDPRYASNVDINWDDILHITEKLTGKNEFQGIGLLNFNKTELDHWEQLIPNVAHVVLDLEYAAKNVTWESLYPEWIDEEEETKVPICPSLPSLRSPGIRLNLIAVKLPHANWGIWSRDVARLHLQLAAARLAASLKGNYPVYVLFITKFFPIPNLFTCKELVEHEGNVWLYRPHLIVLREKLQLPVGSCELSLPLRDKELIYAGNVRTEAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETIGEYHRSGLEAAGWKIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIVFIDADLLILRNIDFLFGMPEITATGNDATLFNSGVMVVEPSNCTFKLLMDHINEFDSYNGGDQGYLNEIFTWWHRMPRHMNFLKHFWVGDDEETKQMKSLLFGADPPILYVLHYLGMKPWLCFRDYDCNWNADIFHEFASDVAHERWWKVHDAMPKLLQQFCMLKSKQKAQLEWDRRQAKTANYSDGHWRIKVKDKRLKKCIDNLCSWKNMLKNWGETNWTDDDESYYTPTPPAITTASLSNL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01325 643 FunFam Hexosyltransferase 306 558 - -
Spst3g01325 643 Pfam Glycosyl transferase family 8 315 521 IPR002495 GO:0016757
Spst3g01325 643 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 306 557 IPR029044 -
Spst3g01325 643 SUPERFAMILY Nucleotide-diphospho-sugar transferases 310 554 IPR029044 -
Spst3g01325 643 PANTHER GLYCOGENIN SUBFAMILY MEMBER 217 601 - -
Spst3g01325 643 CDD GT8_Glycogenin 309 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01325 Spst-Chr3 16686973 16691791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01325 9 643 Glycosyltransferase AT3G18660 61.751 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01325 K20890 - gmx:100783884 1165.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01325 3 16686973 16691791 Spst3g01325 3 16686973 16691791 ECH
Spst9g01759 9 19447118 19452808 Spst3g01325 3 16686973 16691791 ECH
Spst3g01325 3 16686973 16691791 Spst9g01759 9 19447118 19452808 PCT