Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01285 ATGTCTTGTGATCCAAGCTTGCTTTTGTGCCTGCCCGATGATTTGTTTGGCATGGTGTCGCGGTTCCTCTTGCCCAGAGACGTGTGCAATCTCAGTCTCTGCTGCAAGAGTCTGTATGCTTTTGCATCCTCTGAAAAAGTGTGGTTCACTCAGTGTGACATGATGGAGGTGGTGCCCCACAAGGACCTTGTTGAGTGGAGAGAGGGTGTGTCATCTTACAAGGCACTTTGCCGTTTCCTTTTGAGGGTTAAACCGTTGCTTGGAATATGGGTTCATCAGAACCCTGAGCTTGGTAACCTTGTCTATGTAATGCCTGGTTTTGTTTCCGTTGTCGGGTGCCGGATAATTCCTCAGGAGCTTGGTCATTTAGGGATTCAAGATGGTCCTATCCAATGGTCATCTGTGTTTGAAGTTATCGGTGATTTTGATGGTTCAACTACCTTTTTTCTCCATGGAAGAGAAGAGGAGACAGACTATGTTCATCGTGGCTCGGTCAAGTATATAGATGAGTGTTGCAATGTGCTGTTGCTTGAGATTGAAGCTAGGGAACAAGATTATGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAATAGTAATAGTAATAATAGTAGTAGTAGTAACAGTGCTTTGTTACAGAGTGGGAGCTTGCATGATTCGAGCGTGATGATATCAGGAAAGGTTTGTAGGTCAAACAGTGAGGTCTCTAGGTTATTACAAAGGGAGGGTGGAAATGCTGAGGCAATAGTTCCCTTCAGCAAGTTGGCTTTTAGTGATAGAAGAAAGTTGCTTGAGGTCACTATAGGCCTAGTTCGACAAGATGTTGCTGGCATGGCTGCTGGACCGTTGTTTCCTAGATTGAGAGATGATTGTGACAACTTTCAGAAAGATTTGGTGCTTTTGAAGGAAAGAAGAGCAATCCTTTGTCAAATGTGTAGCAGTGGTAGTAGCCGGATTGACAATGAGGAAAGTTCTCAAGGAGCAGTTGGTCCAGTGCAATTAGAGCTAGATGACATACGAAAGAGTTGTAAATGGTCCAAGGATTTGTCTGATATTCTGAACAAGGAAGATGGTCACATACAATGCACCAAGAAGAAAAGTCTTGGTGGGTATTTCTGGGGTAGCTTTAAACAAATCATTGGAAAATCTAGTTCAGTTAATGAGAGTCATGCAATTTTGAAGAAGCTTACTTCAAGACGTGAGATAAAGCATGCGCGGCTTGAAGATTTTCTTAGATCAAGTGATACAATAGGGCTAACAATAAAGGCCTCAACTATAAAATTATCTTCTTATCGCGCATGGCCAAATATGCCTGATAGTTGGTTTGCACTTTACAAGATGCCATTGCAAGTTCCCTCAGCGGACCAAATTTATGCGGGTTTGTGGGGAGGAACTTTTGGTTGGCCTCCTGGAAAACCTTCTGAAGATAAGCCAGGAAAGGCTCTATTCTTTCTTCTCCTCTCTTATGAGGAATCCCAAGAACAAAAGCTTCTTATTGCAACAAAAATATTGGAAGGCACTCAGTATGTCTTGCATCCTAATGGTTCAGCAATGTTTATAGTGGATATCAATGATCCTTCATTTGATTCCTTTCCCTTGGACACCAATAAAGACACCTTGTCAGTGGATATCAAACATGCTTTCACAGGAGAGGGTATTTCAAATGGTTATGGGTTCAGATACCCTGGATCAAAGCCCGGTTCCCTCTTTGTATTTGAAAATGGTGTCCTTGCCTTTGTTTGGAAGGACACTAGGTCTGTCTTGACTTTGCAAAGACTTGACTTGCAAGAACTTTTGAAGAAAGGAGAGAGAGTACCCTCTCTGCCTCCCATCAACAATTTTTCTTATTTGACTAAGTCGTACTCAAATGTGTTTACAGGCTTTCCTGGCGCTTCGACTTGCTCGCCTTTATCAAGGTTTGACTTGACCCTGACATGTCAATTTGTTTTTATATTTCAAATTCCCCATCCTCCCCAAAATCAAAATCATGCCATGTTCTCCTTGCTTTATGATGTGTTATAG 2037 0.4202 MSCDPSLLLCLPDDLFGMVSRFLLPRDVCNLSLCCKSLYAFASSEKVWFTQCDMMEVVPHKDLVEWREGVSSYKALCRFLLRVKPLLGIWVHQNPELGNLVYVMPGFVSVVGCRIIPQELGHLGIQDGPIQWSSVFEVIGDFDGSTTFFLHGREEETDYVHRGSVKYIDECCNVLLLEIEAREQDYGSSSSSSSSSSSSSNSNSNSNNSSSSNSALLQSGSLHDSSVMISGKVCRSNSEVSRLLQREGGNAEAIVPFSKLAFSDRRKLLEVTIGLVRQDVAGMAAGPLFPRLRDDCDNFQKDLVLLKERRAILCQMCSSGSSRIDNEESSQGAVGPVQLELDDIRKSCKWSKDLSDILNKEDGHIQCTKKKSLGGYFWGSFKQIIGKSSSVNESHAILKKLTSRREIKHARLEDFLRSSDTIGLTIKASTIKLSSYRAWPNMPDSWFALYKMPLQVPSADQIYAGLWGGTFGWPPGKPSEDKPGKALFFLLLSYEESQEQKLLIATKILEGTQYVLHPNGSAMFIVDINDPSFDSFPLDTNKDTLSVDIKHAFTGEGISNGYGFRYPGSKPGSLFVFENGVLAFVWKDTRSVLTLQRLDLQELLKKGERVPSLPPINNFSYLTKSYSNVFTGFPGASTCSPLSRFDLTLTCQFVFIFQIPHPPQNQNHAMFSLLYDVL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01285 678 PANTHER F-BOX PROTEIN FAMILY-LIKE 2 640 IPR040275 -
Spst3g01285 678 MobiDBLite consensus disorder prediction 186 217 - -
Spst3g01285 678 SUPERFAMILY F-box domain 4 59 IPR036047 GO:0005515
Spst3g01285 678 ProSiteProfiles F-box domain profile. 5 51 IPR001810 GO:0005515
Spst3g01285 678 Pfam Cyclin D1 binding domain 486 601 - -
Spst3g01285 678 Gene3D - 3 84 - -
Spst3g01285 678 Pfam F-box domain 8 49 IPR001810 GO:0005515
Spst3g01285 678 SMART fbox_2 11 51 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01285 Spst-Chr3 16280726 16282762 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01285 - - gmx:100781734 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01285 3 16280726 16282762 Spst3g01285 3 16280726 16282762 ECH
Spst3g01285 3 16280726 16282762 Spst9g01884 9 25096975 25098855 PCT