Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01197 ATGAAGCCAGAAGCATTACCCAGGAATCTTCATTCATCAGCTGTAATGGTAGTATCTGGCATGCAGCAGAGACAAATTGTGTTGTCTGTTGGCAAAGACAAGAGAATTTTGGGCTACGATGCTCATGTTGGAAGACAAGATTTCATGCAGCAAGTTGATAGTAAATGTATGAGTGTCCTGCCAAATCCGCATGACTTCAATTTATTCATGGTTCAAACGGGGACCCCTGAGAGGCAGCTTCGATTGTTTGATATTAGATCAAAACGGACAGAACTTCATGGCTTAGGATGGAAGCAAGAAAGCAGCGAGTCTCAGTCAGCTCTGATAAATCAGGCTTGGTCTCCAAATGGAGTGTACATATCATCTGGTTCAGCTGATCCTATGATTCACATATTTGACATAAGATATAATGCTCACAAGCCTTCCAATCTATACAAGCTCATCAGAAACGAGTCTTCAGAGCCATATGGATTCGCTCTGTTCCCTTTCTCATTTCCATATCATCTGATCTCAACATTGGGTTACACAAGATTTCTTTCAGAGTCACCTACTACACGTTTACTTCAGCCCATGGGCAACTGCTGCTCCGACATCGCCGGCGGCAGAACGGCCGTCGGTGGCACCGCTTCCGGCCAACTCAATCCGGCCAACGGTCCTAACGAAGCCGTCGATAATTTCCTCAGGTCTCGCGGTTATAACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTACTGGCTTGCGTGATCGGGATATAATCTCCAAGAGTGATCCAATGTTGGTTCTTTATGAAAGAGGAAAAAATGGAGCACTCAAGGAAGTTGGCCGGACAGAAGTAATTCTGAATTCACTAAATCCTACATGGATTACTAAGCACACTCTCACTTATCAATTTGAGGCTGTTCAGGATTTAGTGTTTCGTGTGTACGATGTTGATACTCAGTTTCACAATGCAGATGTAAAGATACTAAAGCTAGAAGAGCAGGAATATCTAGGTGAGGCAACCTGTGCATTATCTGAGTCCCGAAACTGTGGAAAGCTCTTGGTGCATGCTGAGGAATGTGTTAGCTCAAAGACAACAGTAGAGATGACACTCAGGTGTTCTGATTTGGAATATAGGGATCTTTTCTCAAAAAGTGATCCCTTTTTATTGATATCAAAAGTTGTGGAAGGTGGTAGTCATATTCCAATTTGCAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAACCAGTATTCTTGAATATTCAACAAATAGGAAGCAAGGAAAATCCTATGATAATGGAGTGCTATAATTTTAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGATGGAGCTGGAGAAGCTTTTTTCTAGTGGCCAAGGAGTAAATTTTTTTTTATCTTCTGCTGGGGGTCATAATTCTCATAACAAGGTGTTAAAGAGCCGGTTATTTGTGGACAAATATGTTGAAAGTGTCCAACATTCTTTCTTGGATTACTTGGCTGGGGGGTTTGAATTGAACTTCATGGTGGCAGTTGATTTTACAGCTTCGAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATAATGATCCTTCAGGACGGCCAAATGCATATCAGAGGGCAATTTTAGAGGTAGGGGAGGTCTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCGCGACCAATTGATGGCCCTGTGTCCCACTGTTTCAACTTGAATGGAAGCAGCCATTACTGTGAGGTGGAAGGCATCCAAGGAATCATGAAGGCATACACTAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCCGTCATAAGCAATGCTGCACTGATAGCAAGCCAATCTTCAGCAAATGGCGACAGAAAGTACTTTGTTTTGTTAATAATCACAGACGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCCCTCGTTAAGGCATCGGATCTACCGTTATCAATCCTTATTGTTGGTGTTGGAGGAGCTGATTTCAAAGAAATGGAGATTTTAGATGCCGACAAAGGAGAGAAGCTTGAAAGTTCTTCTGGTCGCGTTGCTTCCCGTGATATAGTCCAATTTGTTCCATTTCGTGACGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTGGCTGAATTACCTACTCAATTTTTAACTTACATGCGGAGCAGAAGTATCCAACCGAGTGTCTAG 2241 0.4239 MKPEALPRNLHSSAVMVVSGMQQRQIVLSVGKDKRILGYDAHVGRQDFMQQVDSKCMSVLPNPHDFNLFMVQTGTPERQLRLFDIRSKRTELHGLGWKQESSESQSALINQAWSPNGVYISSGSADPMIHIFDIRYNAHKPSNLYKLIRNESSEPYGFALFPFSFPYHLISTLGYTRFLSESPTTRLLQPMGNCCSDIAGGRTAVGGTASGQLNPANGPNEAVDNFLRSRGYNGLFSQIELSFSATGLRDRDIISKSDPMLVLYERGKNGALKEVGRTEVILNSLNPTWITKHTLTYQFEAVQDLVFRVYDVDTQFHNADVKILKLEEQEYLGEATCALSESRNCGKLLVHAEECVSSKTTVEMTLRCSDLEYRDLFSKSDPFLLISKVVEGGSHIPICKTEVIKNDHNPIWKPVFLNIQQIGSKENPMIMECYNFNSNGKHDLMGKVQKSLMELEKLFSSGQGVNFFLSSAGGHNSHNKVLKSRLFVDKYVESVQHSFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYNDPSGRPNAYQRAILEVGEVLQYYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMKAYTSALLNVSLAGPTLFGPVISNAALIASQSSANGDRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGEKLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLTYMRSRSIQPSV 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01197 746 CDD C2A_Copine 237 341 - -
Spst3g01197 746 ProSiteProfiles VWFA domain profile. 510 729 IPR002035 -
Spst3g01197 746 SUPERFAMILY WD40 repeat-like 10 162 IPR036322 GO:0005515
Spst3g01197 746 CDD C2B_Copine 362 457 IPR037768 -
Spst3g01197 746 SMART VWA_4 508 705 IPR002035 -
Spst3g01197 746 Gene3D - 8 164 IPR015943 GO:0005515
Spst3g01197 746 Gene3D C2 domain 352 466 IPR035892 -
Spst3g01197 746 Gene3D C2 domain 241 351 IPR035892 -
Spst3g01197 746 Pfam C2 domain 366 455 IPR000008 -
Spst3g01197 746 Pfam C2 domain 244 341 IPR000008 -
Spst3g01197 746 ProSiteProfiles C2 domain profile. 353 469 IPR000008 -
Spst3g01197 746 PANTHER COPINE 223 745 IPR045052 GO:0005544
Spst3g01197 746 SUPERFAMILY vWA-like 509 691 IPR036465 -
Spst3g01197 746 FunFam Protein BONZAI 1 241 342 - -
Spst3g01197 746 CDD vWA_copine_like 479 733 IPR010734 -
Spst3g01197 746 FunFam Protein BONZAI 1 isoform A 361 481 - -
Spst3g01197 746 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 243 342 IPR035892 -
Spst3g01197 746 SMART C2_3c 238 351 IPR000008 -
Spst3g01197 746 SMART C2_3c 365 464 IPR000008 -
Spst3g01197 746 Pfam Copine 529 744 IPR010734 -
Spst3g01197 746 ProSiteProfiles C2 domain profile. 218 352 IPR000008 -
Spst3g01197 746 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 366 459 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01197 Spst-Chr3 15497379 15509926 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01197 - - vra:106768925 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01197 3 15497379 15509926 Spst9g01780 9 20039068 20042941 PCT