Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00325 ATGGGTAAAGCCCGACATAAAATGGCTGAAGCAACCAACAGACAGATCAGAAGTAGCAGAAAATGCAATTCTAAACAGACCGTAGAGAAATCAAATGAACATCCTGAATGGTTACCTGATGGTTGGCATGTGGACTTCAGAACTCGAAAAAGTGGTGCATACATGGGATGTGGGTACAAGTGTTACATTGATCCAAGTGGACTCAAATTCTACTCCAAACCAGAGGTGTTACGATATCTTGAGACTATGAACAGCAACATTAACACTTCTAAGAAGAAAAAGATATGCAAAAGCAATGATGTAGTTGAGAAGTCCACTGCAGAGGATTTACCACCGGGGCAGATAACAGAAGTCAAGATAAGGAAGGGCAATAATGGCTATAGGACAGATCCGGATGTGGTGGAGAAGTCCCCAGTTGAGGATTTACCACCTGGATGGATAACAGAAGCCAAGGCTAGGAAGGGTGGTACTGGTAATAAGAAAGATCTGGATGCAGTTGAGAAGTCCACCATAGAGGATTTACCACCCGGGCAGACAAAAAATGTCAAAATTAGGAAGGGCAGTAATACCAATAAGATAGATCCGGATGGGGTCGAGAAGTCCCCAGTTGAGGATTTACCACCTGGGTGGATAACAGAAGCCAAGGTTAGGAAGGGTGGCACTGGCAAGAAGAAAGATCTGTTTTATTTAGATCCAGTGAGTGGATATGTATTTCGCTCCAAGAAGGATGCACTGCGCTATGTTAATTCTGGAGATATAGATGCGTGTGTACTTAAACCATATAAAAGAGAAATCCAAGATGAAGACAAAATAACTCCATCATCTACTGGCAAAAGACAGAAACTAAAGCAGACTACAGTGATGGTTGCTCCTGTTCTCCCGGGTGAACCTGTTCTCAAGAGACAACCGTTAGATAATGCAGCTGCACACACTCCTGAAATGATAAAAACATTTGATTCAGATGATGTGCTGCAGAAGAAACATCTTGTAAATATGCTGGACAATGCTAGTAAAAAGAATCAGAGCAACAGTAGTTTATCCAACATCAAGGAGTCAAATGTGGCTCGCCGTTTTTCACGGAGACTTTCTAGGGCTGAACCTGACAACACCTATGTGGCCAATAATGAACAGGCTCTTCAAGTTCCTGAAAGAAACATGGAAAAAAGTATAAGTGTTTTAGACACTGATTTGACAAATAAGTCATATCAGCAGCTGAATGGTTTCCTGGAAATTGAGCATTCGCATGAAAAGCAAGCAGAGGTACTATTGAACTCAAACAAATCCAGACACAAGAAAGAGCTACAGATTTTTTGTCGTGCTTCAGAACGATTAGCTGGATTTCAACCCAAGCCAATGAGCAACTCCATTTCCCACAAAAAGGCTCCCGAATATAGAAGTATAAAGTCGAAAGGTGAGGTCAAAGCAACCTTGCAGGAAAGTGAGGATCAGCCAGCTACGGAGCTGGCAGATCATGCATCAATAAATGGAGAGTCATCAAATAAAGGCAGAAAACTTCCTGAAACCACACCCATAACTAGCAATCAACTTAAGAAATTTGATGTGGAAGAAATGAATAACGATGAGAAATCAGAACTTGAGCAATCCTTTGCATTTCATTATTCTTGGTCTGACCCATGCTTAGAATTTGCAATTCAGACTCTCACAGGTGCATTACCAGTTGAAGATTCAGTTGATAATGGACATGCTAGGATTTCTGAATCTGATATATCACCCAAAAATAAGTTGGTTGAGAATGTTAAAGGAAGCAGCAGTGACGAAATCTCACGTGTAAATTCAAAGAAATCCAATAATAATAAAGAGCTTACAGTGCCAAGACGGTTGTCAAAGCGGCTTGCTGGCGACGAACCTGAGGTACTGCCTACTGAAAAACCTGTTGAATATGCCCCTCGAAAATCGTGCAGTGACAAACCAGCTACTACTGCGATTTTAACTAATGGAGTGTCTGGGCATCTTCATGCCAGTGAAGAATCCAAGCTTGTTGTCCAGGCATCGGACAGGTTGAAAACATGTGGTGAATCGCTGAGCAAGAGTGAGAAGTCATATGATAACCTAACGGTTCCCAATGAACAATTGCAGAGGCATGAAGATGAAAATGTTGATGAGGACAGATCAGATTTACAGTTCCCCACACCTTTTGGGGACTCCTGGTCAGATCCTTGCCTAGAATTTGCAATTAAGACTCTTACTGGTGCTTTGCCAGTTGATGCACCAGCCGCTGACATTTTACCTGCTGTGACTCCTGATGTTAATGATCCCCCGAATAAGGAGTCACTTGATAGTATGGAACAGATAAATATTAATGCAGAAAGTCGTGATAATCCCTACCAAACCCATACCAAGAAAGACTTTAATACTGTTTGCCAGACATTGGAACAAGTCTTGAACCAGCCTGAGGTGAGGTCCTGCTCCACAGCCTGTGCAAATGATCCTAAATTTGAAACTGAAGAGTCTTACAAGGATGGAGACAGTATAATAAAGAATTATAGTGGAAGAGAATCACAACGTATTAAAGCTGGGAACGCATTAGAAATTGATATAAACAAAACAATACTTGAAGAAGAGCCACAACCTGAAACAATAAACCATGATAACTCTGAAAGAACATTCTGTGCTTCATATATGGATTCTTGGTCAGACCCATGCCTAGAGTTTGCATTTAATACTCTTTCAGGCGCAATACCAGCAAAGGAAAATGTAACAATTCAAGCATGTTTCCAGGAACCTGCCAATAGCCATGGCCAAAGAGGAGGTGGCTCGACAGTGCCGGAATTTGGATTGTCCAGCATTTCTCATAGTGGTATCTCATTTCACAATGATGTAGGGGATAAGTCCAAGTCAGTGCAACAGTCACCAGTGAGTTCTTCTTTCCCACCCCTGGGAAAACAAGGCCTGAACGGTTTCTCGGGGGTTGCTCCTCAAGGACAATACTTTCAGAATAGTAATAATTTGCAGACAAAGTGA 2982 0.4178 MGKARHKMAEATNRQIRSSRKCNSKQTVEKSNEHPEWLPDGWHVDFRTRKSGAYMGCGYKCYIDPSGLKFYSKPEVLRYLETMNSNINTSKKKKICKSNDVVEKSTAEDLPPGQITEVKIRKGNNGYRTDPDVVEKSPVEDLPPGWITEAKARKGGTGNKKDLDAVEKSTIEDLPPGQTKNVKIRKGSNTNKIDPDGVEKSPVEDLPPGWITEAKVRKGGTGKKKDLFYLDPVSGYVFRSKKDALRYVNSGDIDACVLKPYKREIQDEDKITPSSTGKRQKLKQTTVMVAPVLPGEPVLKRQPLDNAAAHTPEMIKTFDSDDVLQKKHLVNMLDNASKKNQSNSSLSNIKESNVARRFSRRLSRAEPDNTYVANNEQALQVPERNMEKSISVLDTDLTNKSYQQLNGFLEIEHSHEKQAEVLLNSNKSRHKKELQIFCRASERLAGFQPKPMSNSISHKKAPEYRSIKSKGEVKATLQESEDQPATELADHASINGESSNKGRKLPETTPITSNQLKKFDVEEMNNDEKSELEQSFAFHYSWSDPCLEFAIQTLTGALPVEDSVDNGHARISESDISPKNKLVENVKGSSSDEISRVNSKKSNNNKELTVPRRLSKRLAGDEPEVLPTEKPVEYAPRKSCSDKPATTAILTNGVSGHLHASEESKLVVQASDRLKTCGESLSKSEKSYDNLTVPNEQLQRHEDENVDEDRSDLQFPTPFGDSWSDPCLEFAIKTLTGALPVDAPAADILPAVTPDVNDPPNKESLDSMEQININAESRDNPYQTHTKKDFNTVCQTLEQVLNQPEVRSCSTACANDPKFETEESYKDGDSIIKNYSGRESQRIKAGNALEIDINKTILEEEPQPETINHDNSERTFCASYMDSWSDPCLEFAFNTLSGAIPAKENVTIQACFQEPANSHGQRGGGSTVPEFGLSSISHSGISFHNDVGDKSKSVQQSPVSSSFPPLGKQGLNGFSGVAPQGQYFQNSNNLQTK 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00325 993 SUPERFAMILY DNA-binding domain 33 85 IPR016177 GO:0003677
Spst2g00325 993 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 196 268 IPR001739 GO:0003677
Spst2g00325 993 MobiDBLite consensus disorder prediction 584 605 - -
Spst2g00325 993 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 28 106 IPR001739 GO:0003677
Spst2g00325 993 MobiDBLite consensus disorder prediction 471 512 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 584 620 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 1 34 - -
Spst2g00325 993 SUPERFAMILY DNA-binding domain 205 253 IPR016177 GO:0003677
Spst2g00325 993 MobiDBLite consensus disorder prediction 975 993 - -
Spst2g00325 993 Pfam Methyl-CpG binding domain 206 251 IPR001739 GO:0003677
Spst2g00325 993 Pfam Methyl-CpG binding domain 30 85 IPR001739 GO:0003677
Spst2g00325 993 PANTHER OS04G0193200 PROTEIN 133 162 IPR038945 -
Spst2g00325 993 MobiDBLite consensus disorder prediction 492 512 - -
Spst2g00325 993 Gene3D - 187 288 - -
Spst2g00325 993 Gene3D - 1 109 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 679 710 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 606 620 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 679 695 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 696 710 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 123 137 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 187 201 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 944 968 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 123 144 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 944 993 - -
Spst2g00325 993 MobiDBLite consensus disorder prediction 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00325 Spst-Chr2 2530285 2540005 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00325 - - vra:106777576 1426.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00325 2 2530285 2540005 Spst3g01129 3 14628467 14637793 PCT