LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g01102	ATGGGAAATCGACGCTTCACTCAGGTCGCAACCAGCGACGAGGAGGACGAAGCGCCGCCTCCGCCTCCGAAGCTACAATCTACGGCCACTGCCTCCGACGAGAACCCGTCGAAGCAGCAGCGCAAGAGGAAGAGGATGAAGCTCCAGGAAGAAGAGGAGGAAGTGGAGAAAGAGAGCGATAAGGAGAAAGAAATAGAGGAAGACAAGAAGAAGAAGAGAAAGATCAGAGACAAACAGGACGGGAGATCTAACGAAGAAGAGGAACCGCCGCAGGAAGATGCCAAGCCCATCGGCGAACCGGTTAGGGTTTCCGGAAAGGGGAGAGGCCGGAAAAAGCATTTCGATTCCTTCGAGTACGACGGGAACCAATACACGCTGGAAGACCCTATACTTCTCACACCTGAGGACAAAGACCAAAAGCCATATGTGGCTATTATTAAGGACATTACTCAATCCTTAAATGGCAGCATGATGGTCACAGGGCAGTGGTTCTATCGACCCGAAGAAGCTGAAAGAAAAGGTGGTGGCAGCTGGCAATCACGTGACACAAGGGAGCTGTTTTATAGTTTCCACCGTGATGATGTTCCTGCAGAATCTGTTATGCATAAGTGTGTGGTGCATTTTGTGCCCATACACAAACAGCTTCCAAATCGTAAGCATCATCCTGGGTTTATTGTGCAAAAGGTGTATGACACAGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGAAGACAATAAACAGCAAGAAATTGATGAGCTTGTTCAGAAAACTCTTCAACGTTTGGGTGAACTACTTGATATTGAGCCTGAAGAACCTGTTGCTGATCAGGAAGATCTGATGAAAAATAAAAGAATCTTAAGGAAAAAAAGCATTTCACCTCTTGATGTTTCAAAGGAGGAGGAAACAACTCGTAAGAGTGACCAATCTCTGAAACCTGAAACACCAGGGAGTTGTGCAAATAATGCTTCAGAACATTATCGCATATTAGTGGATTTCAATGCTCTAACTGGAGATACCCATCGTGACAAATGTTTGGAGAAGTTGCTTCAAAGTGTTCAATTCATGTTTAACTCTGATGACAGCATAAAGAAGGACGACAAAGGAAATGACAATTCTGATGCAATCAACAATGGAAACAATGACAAAAATTCAGAAGTAGCAAATGACTGCAAAGACAAGGTTCAAGAGATTTCCAAGTCTTTTGTCTGGCCAGATGTTGCCGTTCCCGCTGTAGTTGCTCTGGAAAAAGCCTCACATGATACCTTTTCATCAGATTATCAGAAGTATAATCAAAAGCTACGGCAATTAGTATTTAATCTCAAGAACAATGCAATCCTAGCACGGCGTCTATTAAACGGAGAGTTGGAACCTTCTAAAATATTGAATATGACACCCAATGAATTGAAGGAGGGTTTGACTGCTGAGGAAACAAACAAGAAAGAGCCTGATGAGTCACAACAAATGCAGATGACGGGTGCGCGATGCCGAAGATGTAGCGAGTGTAAGGTGGGCTTGAGGGATATTATCCACGCAGGACATGGTGATCGATATCAGCTGGAATGCATTTCCTGTGGCCATTCCTGGTTTGCCTCCCGTGATGAAGTGTCTGACCTGACTATAGATGCGTCAGATTCAAAAAGAAGTGTAGGTACAGCGCCATGGGCCACTGCAAAATTTGAAGATGTTGAGAAGAAGCTGGTTAGTCCCCGTGAATCTGAAAAGAATGACATACTTAAAAAAACAAGTGAAGCATATATGCCGGTTTTGGATGCCCAGAAATCGTTTGGCAAGTCTAGGAAAGATGAAAACGTCCAAGCCGCTTCATCAAAACAGGTTGTGACTGGTGACTAG	1860	0.443	MGNRRFTQVATSDEEDEAPPPPPKLQSTATASDENPSKQQRKRKRMKLQEEEEEVEKESDKEKEIEEDKKKKRKIRDKQDGRSNEEEEPPQEDAKPIGEPVRVSGKGRGRKKHFDSFEYDGNQYTLEDPILLTPEDKDQKPYVAIIKDITQSLNGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPNRKHHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGELLDIEPEEPVADQEDLMKNKRILRKKSISPLDVSKEEETTRKSDQSLKPETPGSCANNASEHYRILVDFNALTGDTHRDKCLEKLLQSVQFMFNSDDSIKKDDKGNDNSDAINNGNNDKNSEVANDCKDKVQEISKSFVWPDVAVPAVVALEKASHDTFSSDYQKYNQKLRQLVFNLKNNAILARRLLNGELEPSKILNMTPNELKEGLTAEETNKKEPDESQQMQMTGARCRRCSECKVGLRDIIHAGHGDRYQLECISCGHSWFASRDEVSDLTIDASDSKRSVGTAPWATAKFEDVEKKLVSPRESEKNDILKKTSEAYMPVLDAQKSFGKSRKDENVQAASSKQVVTGD	619

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g01102	619	MobiDBLite	consensus disorder prediction	36	54	-	-
	Spst3g01102	619	MobiDBLite	consensus disorder prediction	597	619	-	-
	Spst3g01102	619	MobiDBLite	consensus disorder prediction	364	388	-	-
	Spst3g01102	619	CDD	BAH_plant_3	104	250	-	-
	Spst3g01102	619	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	608	-	-
	Spst3g01102	619	MobiDBLite	consensus disorder prediction	298	323	-	-
	Spst3g01102	619	Gene3D	-	323	473	IPR036575	GO:0006351
	Spst3g01102	619	ProSiteProfiles	TFIIS central domain profile.	343	499	IPR003618	GO:0006351
	Spst3g01102	619	ProSiteProfiles	BAH domain profile.	122	241	IPR001025	GO:0003682
	Spst3g01102	619	MobiDBLite	consensus disorder prediction	1	115	-	-
	Spst3g01102	619	Pfam	Transcription factor S-II (TFIIS), central domain	339	490	IPR003618	GO:0006351
	Spst3g01102	619	Pfam	BAH domain	123	239	IPR001025	GO:0003682
	Spst3g01102	619	SUPERFAMILY	Elongation factor TFIIS domain 2	338	472	IPR036575	GO:0006351
	Spst3g01102	619	SMART	BAH_4	122	241	IPR001025	GO:0003682
	Spst3g01102	619	MobiDBLite	consensus disorder prediction	62	95	-	-
	Spst3g01102	619	Coils	Coil	38	78	-	-
	Spst3g01102	619	Gene3D	-	26	231	IPR043151	-
	Spst3g01102	619	SMART	mid_6	376	481	IPR003618	GO:0006351

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g01102	Spst-Chr3	14438285	14444570	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g01102	-		-	gmx:100787670	1020.76

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst3g01102	3	14438285	14444570	Spst3g01102	3	14438285	14444570	ECH
	Spst2g00302	2	2317350	2324166	Spst3g01102	3	14438285	14444570	PCT