Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01027 ATGATAAGATTTGACAGTATGGACGAAGAATTGGACATTGATGAGGGTGTGCAAGTGCAACGTCAGAACAAAGATGATGGATATTCACTAAATCCTGAATTGTCCAAAATATTAAAACCCCAAGAATATGATGAGAACCCACAAGATAAGAATTTGGTTGAAGCAAGGGAACATTTGCATCCAAGTCTATTTTCTGATGATGCTGGTGTCATGGTTGAAGAATTAATGGTGAAAAGTTACAATGGTTCTACCCTAGATATTGGTACTTTGAACAATCGAGGGCCGTTGCAGAACAGCCGGAGTCCATGGCGGCATATTTATCAGCCGGTTGCTGATTTGCCTGTGGGAAGGGATTGTATTGTAGCTAGAAGGAGTGTTCAAGCTACATTTAGTGCTTGGGAGGATACTGGGTCCATGTCTTCCCGAGAGATATTAGCTACAACATCAGTCAATTATGATCAGGGCAATGTCATGCGGCATTTGTCCGCTGATGAACATACAGATGAACATAAGAATGATGAAGGTGGTGCTCTCGAAGGAATACAAGCAAAAATTATACACAAATCAGGATTTGCAGAGTATTTTAGTAGAAGTACATTGAAGGGAAAGGGTATTGTTTGTAAAGGTCCATCTTCCAATGGTCTATATGTTGAGTCCAGAGATCAGAACATGATGAAGTTTGGAATTGATATTCAGATGGATTCTAATGCAATGATGAACTCCGGTTTAAAGATTGCAAAGTCTCCCAATAAAGTTACAGTGCCAGGATCCGATGGGTCTGACACTGATGGGGTGACTTTGAGAGAATGGTTGAAATGTAGGCAGCACAAACGGAGCAAAACAGAGCATTTAAGTATATTTAGAAAAATTGTGGAGATGGTTGGTGGCTCTCACTCTCAAGGAGTTGCACTGCACAATCTGTACCCGTCTTATATAAAATTGTTACCATTCACCAATGTCATGTACCAAGGGTTGCCAACTCAGAAGCAGAAATTAGATAGTGCTGCAAATTCTGAAGTTCTTCAGCTAGAGAATTCTTTTGCTAGAAAAAGGCTGTCAGAGAAGATAAAATCTCCGTCTCTTAATTTGTGGTCGAAGAAACAGAAATTCAATGAAAATGTTAGAGTTGCTGGTGATCGGACTCAATGCCCTCCTAGGACTGACTTATATCCTCAAATTGCCAATGATATCAAAGTCAATGTAGTGGTATCACAAGATTATTGCAATGAATACCCGGAAGATATCCAATTTTCTAAGCACAATATTTGGAGAATGTCTCGCAACCCTCACATATCTAATGCAGGTCAATTGCCATTGACTTCTGTAAATGAAAGATTGGAAGATGAATGGTATTCAAGTCCGGAGGGTGGTTGCACAATATCAGCAAATATCTACTGTCTGGGAGTCCTTTTTTTTGAGTGCAATTGTAGGAAACATACTGGGTCTGTATTTGGGGGGCAGGGTGGGGGTATGTCTTCCCTTCTTTTGAAACTTAACTTACAAACATCGTTGCTATGGGACATTGGCACTCTTACAAACCAAGAGATGTTTCTGGACCTAAAAGCACATACTGCTGCAATGTCCGCTCTTCGTGGTAGGATTCTTCCTTCAGTTTTCCTATCAGAGTATCCTAAGGAAGCTGGATTTTGCCTTTGGATGCTGCATCCCGAACCATCATCACGTCCAACAATAAGGCAGTTAAGGAGGGAAGAGGAAGCAATGAATTGGTCTGTTGTGCAGCCTGAGAGTGGAGAGGCCGATAAGAAGATCCTTAACACATACATGCAAGGAGTAGGGGATATAGATATAAGGGAGATCTTACAATCTGAAGTGATTAATGGAAAGCAGGAGGTGGACTGTGAGGAATTATTATCAAGTCTTAACCAATATGATGGAGAATCAGAATTGCTATCGCATTTCCTCATCGCACTAAAAGAGCAGAAACACGTGGACGCCAATAAATTGGCTGAAGAAATCAGATGGATGGAATCAGATATAGAAGAGGTGGAGAGGAGACATGCCTCGAGAGTATCCTTGCCTCCCTCAAGCTTGGAGAACAACGCCTCTTGTCATATAGAGAGTGTATCTCTTCTCAAAGAATCTTCAGGTGCAGAAATATTACCACCAGTATACACAATTTCTAAAGCAAATGAACTGAGACTGAAGAAAAATATGTGCCTACTTGAAAATGCTTACATTTCTATGAGATCTACAATGAAGCTTCCTGGATCAGAAACTACAACTCGCCCAGATAAAGATGTACTGAGAAATTCTGACAACTGCTGTGTAGCTCAAAAAGACATGGAAAAACATAAAAGGACAGATACTGTAGGAGCTTTCTTTGACGGTTTGTGCAAGTATGCCCGTTATAGCAAGTTTGAAGTGCGGGGCATGCTAAGAACTGCTGATTTTAACAATCCTGTAAATGTAATCTGCTCTCTGAGTTTCGATAGAGATGGAGACTACTTTGCTGCTGCTGGGATATCAAAGAAAATAAAAATTTTTCAGTTCAATGCACTTTTTAATCACTCTGTCGACATCCATTATCCTTTAGTTGAGATGTCAAACAGATCAAGGCTCAGTTGTGTTTGCTGGAATAGCTACGTCCAGAACTGTCTTGCCACCACAGACTATGATGGTGTAGTTAAGCATCCTAGAATGCAGCTATGGGATGCTAATACAGGTCAAGGGTTTTCTCGATTCACCGAACATGAAAAGAGGGCTTGGTCTGTTGATTTCTCTCTGGTATGCCCTACTAAATTTGCCAGTGGGAGTGATGATTGTTCTTTGAAACTGTGGAGTATCAACGAGTTCTCTGCTCATTCATCTCATTTGCTGGCCTTTGGATCTGCGGATAACTCGACTTATTGCTATGATCTTCGCTTTCTTAGAAACCCTTGGTGTGTGCTGGGTGGCCATCGTAAATCTGTAAGTTTTGTCAAATTCTTGGACTCTGAGACATTAGTTTCTGCATCAACTGATAGTACCTTGAAGATTTGGGATCTCAATAAAACCTCTCCAGTGGGTCGATCGACTGGTGCTTGCAGTTTAACTCTATCAGGACATACTAATGAGAAGAATTTTGTGGGTTTATCAGTTGCTGATGGATATATAACATGTGGTTCAGAAACAAATGAGGTCTATGCCTACTATAAATCTCTTCCCATGCCAGTCATTTCCCACAAGTTTGGGTCCATTGATCCTGTCTCCGGTAAAGAGACTGATGATCACAATGGTCAATTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAGACATGCTTATTGCAGCTAATACAAGTGGATGTATAAAAGTTCTACAGATGGTTTGA 3330 0.4078 MIRFDSMDEELDIDEGVQVQRQNKDDGYSLNPELSKILKPQEYDENPQDKNLVEAREHLHPSLFSDDAGVMVEELMVKSYNGSTLDIGTLNNRGPLQNSRSPWRHIYQPVADLPVGRDCIVARRSVQATFSAWEDTGSMSSREILATTSVNYDQGNVMRHLSADEHTDEHKNDEGGALEGIQAKIIHKSGFAEYFSRSTLKGKGIVCKGPSSNGLYVESRDQNMMKFGIDIQMDSNAMMNSGLKIAKSPNKVTVPGSDGSDTDGVTLREWLKCRQHKRSKTEHLSIFRKIVEMVGGSHSQGVALHNLYPSYIKLLPFTNVMYQGLPTQKQKLDSAANSEVLQLENSFARKRLSEKIKSPSLNLWSKKQKFNENVRVAGDRTQCPPRTDLYPQIANDIKVNVVVSQDYCNEYPEDIQFSKHNIWRMSRNPHISNAGQLPLTSVNERLEDEWYSSPEGGCTISANIYCLGVLFFECNCRKHTGSVFGGQGGGMSSLLLKLNLQTSLLWDIGTLTNQEMFLDLKAHTAAMSALRGRILPSVFLSEYPKEAGFCLWMLHPEPSSRPTIRQLRREEEAMNWSVVQPESGEADKKILNTYMQGVGDIDIREILQSEVINGKQEVDCEELLSSLNQYDGESELLSHFLIALKEQKHVDANKLAEEIRWMESDIEEVERRHASRVSLPPSSLENNASCHIESVSLLKESSGAEILPPVYTISKANELRLKKNMCLLENAYISMRSTMKLPGSETTTRPDKDVLRNSDNCCVAQKDMEKHKRTDTVGAFFDGLCKYARYSKFEVRGMLRTADFNNPVNVICSLSFDRDGDYFAAAGISKKIKIFQFNALFNHSVDIHYPLVEMSNRSRLSCVCWNSYVQNCLATTDYDGVVKHPRMQLWDANTGQGFSRFTEHEKRAWSVDFSLVCPTKFASGSDDCSLKLWSINEFSAHSSHLLAFGSADNSTYCYDLRFLRNPWCVLGGHRKSVSFVKFLDSETLVSASTDSTLKIWDLNKTSPVGRSTGACSLTLSGHTNEKNFVGLSVADGYITCGSETNEVYAYYKSLPMPVISHKFGSIDPVSGKETDDHNGQFVSSVCWRGKSDMLIAANTSGCIKVLQMV 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01027 1109 Gene3D Transferase(Phosphotransferase) domain 1 261 576 - -
Spst3g01027 1109 Coils Coil 652 672 - -
Spst3g01027 1109 ProSiteProfiles Trp-Asp (WD) repeats profile. 901 943 IPR001680 GO:0005515
Spst3g01027 1109 Gene3D - 780 1109 IPR015943 GO:0005515
Spst3g01027 1109 PANTHER PROTEIN SPA1-RELATED 2 603 1109 IPR044630 GO:0009640
Spst3g01027 1109 ProSitePatterns Trp-Asp (WD) repeats signature. 988 1002 IPR019775 -
Spst3g01027 1109 SUPERFAMILY Protein kinase-like (PK-like) 449 569 IPR011009 -
Spst3g01027 1109 Pfam WD domain, G-beta repeat 969 1001 IPR001680 GO:0005515
Spst3g01027 1109 SMART WD40_4 1067 1107 IPR001680 GO:0005515
Spst3g01027 1109 SMART WD40_4 1012 1051 IPR001680 GO:0005515
Spst3g01027 1109 SMART WD40_4 797 836 IPR001680 GO:0005515
Spst3g01027 1109 SMART WD40_4 847 891 IPR001680 GO:0005515
Spst3g01027 1109 SMART WD40_4 894 934 IPR001680 GO:0005515
Spst3g01027 1109 SMART WD40_4 963 1001 IPR001680 GO:0005515
Spst3g01027 1109 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 970 1003 - -
Spst3g01027 1109 ProSiteProfiles Trp-Asp (WD) repeats profile. 970 1010 IPR001680 GO:0005515
Spst3g01027 1109 SUPERFAMILY WD40 repeat-like 804 1107 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01027 Spst-Chr3 13637994 13644553 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01027 K16240 - gmx:100776980 1530.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00254 2 1949513 1956588 Spst3g01027 3 13637994 13644553 PCT