Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00254 ATGTCTGATCTTCGTCATAGGATTCTCCCTCCAATTTTCCTATCAGAAAATCCTAAGGAAGCTGGCTTTTGTCTTTGGTTACTGCATCCTGAACCGTCATCACGTCCAACAACGAGAGAAATACTTCAATCTGAATTGATTAAGGGATTGCAAGAGTTGTTTAGTGAGGAATTGTCATCAAGTATTGACCAAGAAGATGCGGAATCAGAATTGTTATTGCATTTCCTCGTTTTGCTAAAAGAGCAGAAGCAGAACAATGCTTTCAAACTGGTAGAAGAAATCAACTGCTTGGAATCAGATATAGGAGAGGTGGAGAGGAGGCATGACTCAAGAAATTCCTTGGTTTCCTCTGGCTTGCAGAATGATTACTCTTTTCAAAAAGATATTATGCCTCTTAAGAAGGAATCTTCAAGTTTAGAAATGTTGCCTTCGGTATCCCCAATCTCTAATTCAAATGAAGTGAGATTGATGAGAAATATATGCCATCTTGAAAGTGCTTATTTTTCCATGAGATCCAAACTTCAACTTTCTGAAACAGATGCTCCAACTCACCCTGATAAAGATATACTAAGAAATCGTGAGAATTGGTACATGCCCCAAAAAAACGAGGAACAACCTAAAAGGAAAGATACTTTAGGGACATTCTTTGATGGTTTGTGCAAGTATGCGCGATATTGCAAGTTTGAAGTTCGAGGTGTGCTAAGAAATGCTGATTTTAACAATCCTGCAAATGTAATTTGCTCTCTAAGCTTTGATCGCGATGCAGATTACTTTGCTTCAGCTGGGATATCTAAGAAAATAAAAGTTTTTGAGTTTAGTTCACTTTGCAATGACTCAGTTGATATTCATTATCCTGCGGTTGAGATGTCAAACAGATCGAAACTAAGCTGTGTTTGCTGGAATAACTATATTAAGAACTATCTTGCTTCTACAGATTATGACGGTATAGTGAAGTTATGGGATGCTAGTACAGGTCAAGAATTTTCTCAATACACTGAACATGAGAAGAGGGCTTGGTCTGTTGACTTCTCTGTTGTATGCCCCACGAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGTGAGAGAAACTGTTTAGGCACAATCAGGAATGTTGCTAATGTCTGTTGTGTTCAATTCTCTGCACATTCCTCCCATTTGCTCGCCTTTGGATCTGCTGATTACTCAACATATTGCTATGATCTTCGCAATCTTAGAAGTCCCTGGTGTGTTTTGGCTGGCCATCGTAAGGCCGTGAGCTATGTCAAATTCTTGGACTCTGAAACACTAGTTTCTGCTTCTACCGATAATACATTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTTCATCCATTAATGCTTGCAGCCTAACCCTGTCAGGACACACTAACGAAAAGAATTTTGTGGGTCTGTCAGTGGCTGATGGATATATAGCATGTGGTTCAGAAACAAATGAGGTTTACACCTACTATAGATCGCTTCCTATGCCAATCACTTCGCACAAATTTGGGTCCATTGATCCCATTTCTGGTAAAGACACAGAGGATGACAATGGACAGTTTGTTTCAAGTGTATGCTGGAGAGGGAAATCAGACATGCTTATTGCAGCTAATTCAAGTGGATGTGTGAAAGTGTTACAGATGGTTTAA 1671 0.3962 MSDLRHRILPPIFLSENPKEAGFCLWLLHPEPSSRPTTREILQSELIKGLQELFSEELSSSIDQEDAESELLLHFLVLLKEQKQNNAFKLVEEINCLESDIGEVERRHDSRNSLVSSGLQNDYSFQKDIMPLKKESSSLEMLPSVSPISNSNEVRLMRNICHLESAYFSMRSKLQLSETDAPTHPDKDILRNRENWYMPQKNEEQPKRKDTLGTFFDGLCKYARYCKFEVRGVLRNADFNNPANVICSLSFDRDADYFASAGISKKIKVFEFSSLCNDSVDIHYPAVEMSNRSKLSCVCWNNYIKNYLASTDYDGIVKLWDASTGQEFSQYTEHEKRAWSVDFSVVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGSSINACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYTYYRSLPMPITSHKFGSIDPISGKDTEDDNGQFVSSVCWRGKSDMLIAANSSGCVKVLQMV 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00254 556 PANTHER PROTEIN SPA1-RELATED 2 1 556 IPR044630 GO:0009640
Spst2g00254 556 ProSitePatterns Trp-Asp (WD) repeats signature. 435 449 IPR019775 -
Spst2g00254 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 330 IPR001680 GO:0005515
Spst2g00254 556 SMART WD40_4 324 364 IPR001680 GO:0005515
Spst2g00254 556 SMART WD40_4 506 554 IPR001680 GO:0005515
Spst2g00254 556 SMART WD40_4 459 498 IPR001680 GO:0005515
Spst2g00254 556 SMART WD40_4 281 321 IPR001680 GO:0005515
Spst2g00254 556 SMART WD40_4 410 448 IPR001680 GO:0005515
Spst2g00254 556 SMART WD40_4 367 406 IPR001680 GO:0005515
Spst2g00254 556 SMART WD40_4 227 271 IPR001680 GO:0005515
Spst2g00254 556 Coils Coil 80 100 - -
Spst2g00254 556 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 214 556 - -
Spst2g00254 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 457 IPR001680 GO:0005515
Spst2g00254 556 Pfam WD domain, G-beta repeat 326 364 IPR001680 GO:0005515
Spst2g00254 556 Pfam WD domain, G-beta repeat 416 448 IPR001680 GO:0005515
Spst2g00254 556 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 450 - -
Spst2g00254 556 SUPERFAMILY WD40 repeat-like 240 553 IPR036322 GO:0005515
Spst2g00254 556 PRINTS G protein beta WD-40 repeat signature 435 449 IPR020472 -
Spst2g00254 556 PRINTS G protein beta WD-40 repeat signature 351 365 IPR020472 -
Spst2g00254 556 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Spst2g00254 556 Gene3D - 215 556 IPR015943 GO:0005515
Spst2g00254 556 ProSitePatterns Trp-Asp (WD) repeats signature. 308 322 IPR019775 -
Spst2g00254 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 373 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00254 Spst-Chr2 1949513 1956588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00254 351 497 Miscellaneous Gene Families AT5G08390 29.530 4.55e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00254 K16240 - gmx:100778303 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00254 2 1949513 1956588 Spst2g00254 2 1949513 1956588 ECH
Spst2g00254 2 1949513 1956588 Spst3g01027 3 13637994 13644553 PCT