Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01003 ATGCCAACGATTTTGGTTACCGGAGGTGCCGGATACATCGGTAGCCACACCGTCCTCCAGCTTCTCCTCGCCGGTTACAATGTCTTCGCCGTCGACAACTTAGACAACTCCTCCGTAACCGCCATCCTCAGAGTCAAGGAACTCGCCGGAAAATTTGCAAAGAACCTTTCCTTTGTCGAGTTGGACTTGCGGGACAGAGCTGCTCTCGGGAAAGTTTTTTCAACCGCAAAGTTTGATGCTGTCATACATTTTGCTGGGCTGAAAGCAGTAGGTGAAAGTGTGCATAAACCTTTACTCTACTTTGACAACAACTTGATTGGGACAATCATTCTATTTCAAGTCATGTCTGCTCATGGATGCAAGAAGCTCGTGTTCTCATCTTCAGCAACTGTATATGGCTGGCCAAAGGAGGTTCCATGTACTGAAGAGTTCCCTTTGTCAGCGACAAACCCATATGGACGAACCAAGCTCATCATCGAAGAGATTTGTCGTGATCTCCACCGTGCAGAATCAGATTGGAAAATTATACTGTTGAGATATTTCAACCCAGTTGGTGCACATCCTAGTGGTTCTATTGGTGAGGATCCTCATGGAGTTCCGAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTCGGCAGACTACCTTCACTGACGGTTTTTGGAAACGATTATAAAACATGTGACGGCACTGGAGTTCGTGATTACATTCATGTTGTTGACTTAGCAGAAGGGCACATTGCTGCTTTGCGTAAACTGGATGATCCTAAAATTGGTTGTGAAGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAAGGCTTTTGAAAAGGCATCTGGAAAGAAAATTCCACTTGCAATGGGTGGTCGTAGACCTGGAGATGCTGAAATTGTTTATGCATCAACGAAGAAAGCGGAAAGAGAACTTAATTGGACGGCCAAACATGGCATCGATGATATGTGTCGAGATCAATGGAATTGGGCCAGCAAAAACCCATATGGATACGATAGATATGGAGATTCCTCCAAGTGA 1047 0.4489 MPTILVTGGAGYIGSHTVLQLLLAGYNVFAVDNLDNSSVTAILRVKELAGKFAKNLSFVELDLRDRAALGKVFSTAKFDAVIHFAGLKAVGESVHKPLLYFDNNLIGTIILFQVMSAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSATNPYGRTKLIIEEICRDLHRAESDWKIILLRYFNPVGAHPSGSIGEDPHGVPNNLMPFVQQVAVGRLPSLTVFGNDYKTCDGTGVRDYIHVVDLAEGHIAALRKLDDPKIGCEVYNLGTGKGTSVLEMVKAFEKASGKKIPLAMGGRRPGDAEIVYASTKKAERELNWTAKHGIDDMCRDQWNWASKNPYGYDRYGDSSK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01003 348 Gene3D - 4 273 - -
Spst3g01003 348 FunFam UDP-glucose 4-epimerase 4 200 - -
Spst3g01003 348 NCBIfam UDP-glucose 4-epimerase GalE 4 338 IPR005886 GO:0003978|GO:0006012
Spst3g01003 348 CDD UDP_G4E_1_SDR_e 3 332 IPR005886 GO:0003978|GO:0006012
Spst3g01003 348 FunFam UDP-glucose 4-epimerase 4 276 343 - -
Spst3g01003 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 340 IPR036291 -
Spst3g01003 348 Pfam GDP-mannose 4,6 dehydratase 5 328 IPR016040 -
Spst3g01003 348 Gene3D - 192 333 - -
Spst3g01003 348 PRINTS Nucleotide sugar epimerase signature 260 275 - -
Spst3g01003 348 PRINTS Nucleotide sugar epimerase signature 299 316 - -
Spst3g01003 348 PRINTS Nucleotide sugar epimerase signature 234 249 - -
Spst3g01003 348 PANTHER UDP-GLUCOSE 4-EPIMERASE 3 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01003 Spst-Chr3 13419903 13423942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01003 3 316 Miscellaneous Gene Families AT4G00110 27.463 2.03e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01003 K01784 - gmx:100812565 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00230 2 1751270 1754772 Spst3g01003 3 13419903 13423942 PCT