Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00230 ATGGCATCGCGGGTCAGCATTGGCAACCTCACCTCCTCCACACCACCGTATGGTATTAATTCACCGCGTTTTCGTTCATCACACAAGCTTTCTAACAATCCCTCACACCAAAACGCTGCGCATCATAACAACCTCATGCTCAACAAAACCGTCCTGGTAACCGGCGGAGCCGGCTACATCGGCAGCCACACCGTTCTTCAGCTCCTCCTCGGCGGCTTCACTACCGTCGTCGTCGACAATCTCGACAATTCCTCCGAGGTTGCCATCCGCAGAGTGCGGGAGCTCGCCGGCGAGTTTGGGAATAACCTCTTTTTCCACAAGGTGGACCTACGGGACAGAGCTGCACTGGAGCAAATTTTTGTTTCCACACAGTTTGATGCTGTCATACATTTTGCTGGTCTGAAAGCAGTCGGAGAAAGTGTGCAAAAACCTTTACTATACTATAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAGAAAGCTTGTGTTCTCGTCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGCTTATCATTGAAGAAATTTGTCGTGATGTCCACCAAGCAGAGCCAGATTGGAAAATAATATTGTTAAGGTATTTCAACCCAGTTGGTGCGCACCCTAGTGGTTATATTGGGGAGGATCCTCGTGGAATTCCGAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGGCCTGCACTCACAGTTTTTGGAAATGATTATAATACAGTTGATGGCACTGGGGTTCGGGATTATATTCATGTGGTTGATTTAGCAGATGGGCACATTGCTGCATTACTTAAACTAGACGAACCGAGTATTGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCGGTTTTAGAGATGGTTAGAGCTTTCGAAACAGCATCTGGAAAGAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAGTTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTACGGCTATGGAGACCAGGAGGAGCCCACCAATTAA 1188 0.4689 MASRVSIGNLTSSTPPYGINSPRFRSSHKLSNNPSHQNAAHHNNLMLNKTVLVTGGAGYIGSHTVLQLLLGGFTTVVVDNLDNSSEVAIRRVRELAGEFGNNLFFHKVDLRDRAALEQIFVSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCRKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHQAEPDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTVDGTGVRDYIHVVDLADGHIAALLKLDEPSIGCEVYNLGTGKGTSVLEMVRAFETASGKKIPLVMAGRRPGDAEVVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGDQEEPTN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00230 395 PANTHER UDP-GLUCOSE 4-EPIMERASE 48 391 - -
Spst2g00230 395 Pfam GDP-mannose 4,6 dehydratase 52 375 IPR016040 -
Spst2g00230 395 NCBIfam UDP-glucose 4-epimerase GalE 51 385 IPR005886 GO:0003978|GO:0006012
Spst2g00230 395 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 387 IPR036291 -
Spst2g00230 395 Gene3D - 51 320 - -
Spst2g00230 395 CDD UDP_G4E_1_SDR_e 50 379 IPR005886 GO:0003978|GO:0006012
Spst2g00230 395 FunFam UDP-glucose 4-epimerase 4 323 391 - -
Spst2g00230 395 FunFam UDP-glucose 4-epimerase 51 244 - -
Spst2g00230 395 PRINTS Nucleotide sugar epimerase signature 281 296 - -
Spst2g00230 395 PRINTS Nucleotide sugar epimerase signature 346 363 - -
Spst2g00230 395 PRINTS Nucleotide sugar epimerase signature 307 322 - -
Spst2g00230 395 PRINTS Nucleotide sugar epimerase signature 77 93 - -
Spst2g00230 395 Gene3D - 239 380 - -
Spst2g00230 395 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00230 Spst-Chr2 1751270 1754772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00230 50 364 Miscellaneous Gene Families AT4G00110 27.879 6.33e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00230 K01784 - gmx:100818509 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00230 2 1751270 1754772 Spst2g00230 2 1751270 1754772 ECH
Spst2g00230 2 1751270 1754772 Spst3g01003 3 13419903 13423942 PCT