Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00998 ATGTCAATTACTGAGTTTGCTTTGAGTTCAGTTTTCGAAGAGAAGGCACATTGGGAAGGGCAACCGGAACACTGTTCTGGTGAGGCAATCTTGATTTACCTCAATGTGGATGGCGCTGTGACCCCACTGCGCGTACTGGGGTCCGATTCCATTGCTTCGGTGAAACTGAGGATTCAGCAGTGCAAAGGCTTCGTGGTGAAGAAGCAGAAGCTGGTTTTTGGTGGCAGAGAGCTAGCTCGCAACGGCACACTCATCAAGGAGTATGGTGTCGCTGACGGCAATGTTCTTCACATGGTTCTTCGCCTCTCTGATCTTCTTTTCATTGTTGTGCGGACCGTTTCGGGGAAGGTGTTTGAGTTCCACATAGACAGACACCGAAATGTGGGTTATCTGAAGCAACGCATTAGAAAGAAAGGGGAAGGTTTCATTGATCTTGAGGATGATCAAGAGCTTTTCTGCAATGATGAGAAGCTCGATGACGAGAGAGTCTTCCATGACATATGCAAGAGTGATGACGATGTGATTCATTTGATAATTAAGAAATCAGCTAAGATTAGGACCACACCGATTCACAAGGATTTGAATCTCTCCGTGAAGGCACCAGACGAGAGAGTAAAACATTGCAGGGACAAATATGTTCAAATAGCAAAGGTGCCACCTGACGTATGTTTCTGGTTGGAACCAATTATTGTTAATCCCAAGATCAGTTTTTTTCCTTTCCTTTGGGATATGATTAACTCCACATTTGAAGGTTTGAAGAGAGGAAATCACCCTATTAGGTCCTCTGAGGGCACTGGAGGTACTTACTTCATGCAAGATTCAACAGGTCAGGAGCATGTTTCGGTTTTTAAGCCCATGGATGAGGAACCAATGGCTGTGAACAACCCAAGAAATCTTCCAAGTTCATCTAATGGTGAAGGTTTGAAAAAAGGGACAAAGGTTGGTGAAGGAGCCTTGAGGGAAGTTGCAGCGTACTTGTTGGATCATCCAAAGAGTGGACCACGTTTGTTGTCCGGTGAAGAAGTAGGGTTTTCTGGTGTTCCACCAACTGTTATGGTGCAGTGCCTGCACCAAAAGTTTAACCACCCAAATGGATTTTCTTGCTCCTCAAAAGATGTTAAGATCGGGTCACTGCAGAAGTTCATTAGTAATGATGGTAATTGTGAGGACTTTGGACCCTGGGCTTTCCCAGTGGAGGAGGTGCATAAGATTACTGTGCTTGATATAAGATTGGCCAATGCAGACAGACATGCTGGGAATATATTGATTAGAAAGGAGGGAGATGGCCGAATAAAGCTCATTCCTATTGATCATGGTTACTGTCTACCAGATAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCCCAAGCGCGTCAGCCTTATTCTCCTGAGACAGTTGAATATATAAATTCTCTGAATGCTGAAAAAGACATAGAACTTTTGAAATGTTATGGTTGGGATATTCCGCTCCATAGTGCTAGAACACTTCGTATTTCCACAATGTTGCTGAAGAAAGCGGTTGAGAGAGGCCTCACTCCCTATGAAATTGGAAGCATCATGTGTCGGGAAAATTTGAGCAAGGCATCTCTGATTGAAGAGATTATTGGGAAAGCCCAGGATTCCATGCTTCCTGGGTTGGAGGAATCAGAATTTCTTGAAGCCATCTCACAAATCATGGATTCCCATCTTGATAAGCTAGCAAACTAA 1713 0.439 MSITEFALSSVFEEKAHWEGQPEHCSGEAILIYLNVDGAVTPLRVLGSDSIASVKLRIQQCKGFVVKKQKLVFGGRELARNGTLIKEYGVADGNVLHMVLRLSDLLFIVVRTVSGKVFEFHIDRHRNVGYLKQRIRKKGEGFIDLEDDQELFCNDEKLDDERVFHDICKSDDDVIHLIIKKSAKIRTTPIHKDLNLSVKAPDERVKHCRDKYVQIAKVPPDVCFWLEPIIVNPKISFFPFLWDMINSTFEGLKRGNHPIRSSEGTGGTYFMQDSTGQEHVSVFKPMDEEPMAVNNPRNLPSSSNGEGLKKGTKVGEGALREVAAYLLDHPKSGPRLLSGEEVGFSGVPPTVMVQCLHQKFNHPNGFSCSSKDVKIGSLQKFISNDGNCEDFGPWAFPVEEVHKITVLDIRLANADRHAGNILIRKEGDGRIKLIPIDHGYCLPDKFEDCTFDWLYWPQARQPYSPETVEYINSLNAEKDIELLKCYGWDIPLHSARTLRISTMLLKKAVERGLTPYEIGSIMCRENLSKASLIEEIIGKAQDSMLPGLEESEFLEAISQIMDSHLDKLAN 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00998 570 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 255 552 IPR000403 -
Spst3g00998 570 Pfam Ubiquitin family 36 102 IPR000626 GO:0005515
Spst3g00998 570 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 41 544 IPR044571 -
Spst3g00998 570 Gene3D - 107 195 - -
Spst3g00998 570 ProSiteProfiles Ubiquitin domain profile. 32 101 IPR000626 GO:0005515
Spst3g00998 570 Gene3D - 21 104 - -
Spst3g00998 570 SUPERFAMILY Ubiquitin-like 101 181 IPR029071 -
Spst3g00998 570 SUPERFAMILY Protein kinase-like (PK-like) 410 568 IPR011009 -
Spst3g00998 570 SUPERFAMILY Ubiquitin-like 35 103 IPR029071 -
Spst3g00998 570 Pfam Phosphatidylinositol 3- and 4-kinase 264 518 IPR000403 -
Spst3g00998 570 SMART ubq_7 30 101 IPR000626 GO:0005515
Spst3g00998 570 SMART ubq_7 106 180 IPR000626 GO:0005515
Spst3g00998 570 CDD Ubl_ubiquitin_like 108 178 - -
Spst3g00998 570 ProSiteProfiles Ubiquitin domain profile. 106 184 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00998 Spst-Chr3 13393039 13395379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00998 1 569 Acyl Lipid Metabolism Gene Families AT5G24240 56.174 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00998 - - gmx:100809172 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00225 2 1709240 1711194 Spst3g00998 3 13393039 13395379 PCT