Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00553 ATGCAACATTTGCCAGCCACGTTGTGCCGCAAACTGGCTCGTCCAGCATGCGATGTGTTCATAAACCACCGTGGGATCGACACGAAAAGGAACATCGCGGGGTTGCTCTATGACCGTTTGACGAGGATGGAAGTGCGGTCGTTTTTGGACAGCATGAACATGAAACCTGGGGACAGGTTGTTCCATCACATCGACAGGGCCATTCTCGGGTGCAAAGTGGGTGTTGCGGTGTTTTCTCCACGTTACTGTGAGTCGTATTTTTGTCTCCATGAACTCGCTCTTCTCATGGAGTCAAAGAAGAGGGTTGTCCCCATCTTCTACGACGTTAAACCTTCGCAGCTCGTGGTCAAGGACAACGGAACTTGCCCTTCTAAAGAGCTTCAGAGGTTCTCTTTGGCACTCGAGGAAGCTAAATACACTGTTGGATTGACCTTTGATTCTTTCAAAGGGGACTGGTCAGAGACGCTTAGGGATGCTTCTGATGCAGTGATCATGAACTTGCTGGAGGTAGAGGAAGAGCGTAAGCGCATGAAGAGGAAACTGTGA 546 0.4982 MQHLPATLCRKLARPACDVFINHRGIDTKRNIAGLLYDRLTRMEVRSFLDSMNMKPGDRLFHHIDRAILGCKVGVAVFSPRYCESYFCLHELALLMESKKRVVPIFYDVKPSQLVVKDNGTCPSKELQRFSLALEEAKYTVGLTFDSFKGDWSETLRDASDAVIMNLLEVEEERKRMKRKL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00553 181 ProSiteProfiles TIR domain profile. 15 160 IPR000157 GO:0007165
Spst3g00553 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 138 IPR035897 -
Spst3g00553 181 Pfam TIR domain 19 112 IPR000157 GO:0007165
Spst3g00553 181 Gene3D - 13 174 IPR035897 -
Spst3g00553 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 14 178 - -
Spst3g00553 181 SMART till_3 16 162 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00553 Spst-Chr3 9046703 9047390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00553 12 146 Miscellaneous Gene Families AT1G57670 32.000 2.92e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00553 - - gmx:100798207 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00553 3 9046703 9047390 Spst6g00732 6 6641904 6642517 PCT