Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01915 ATGGCTTCCATTACCGGATCCAACTGCGTCGCTCTCCGAACCGCCAACTTCGCCGCATCCGGTAACCGGAAAGTCGGTCAGATCCGGCAATGGTCTCCGGTTCTCAAGAATCTCCGTTCCGTTTCCGTTTCCGGTTTTCGTCACCAATCGAATGTGCCGTTTAGATCCTCCGGTTTGAGAGCGCAGGTTGCTACTCTGGAGGAAGCGGGAACTGGAGCAATTCAGAAAGTGGAAGCGCCAGTTGTAGTGGTGACCGGAGCTTCCAGAGGCATTGGCCGAGCGATTGCACTGTCGTTAGGTAAAGCAGGTTGCAAGGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCCGAGGAGGTTTCCAAGGAGATTGAGGCATTCGGTGGGCAAGCTCTTACATTTGGTGGAGATGTTTCTAACGAGGCTGATGTGGAGGCTATGATTAAAACTGCAGTTGATGCTTGGGGAACAGTTGATGTATTGATAAACAATGCTGGTATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGAGGTTATTGATCTAAATCTAACTGGTGTTTTTCTTTGCATACAGGCTGCTGCTAAGGTTATGATGAAGAAAAAGAAGGGAAGGATAGTGAATATTGCATCAGTTGTTGGTTTGGTTGGTAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCAGGAGTGATTGGCCTGACAAAAACAGTTGCAAAGGAATATGCTAGCAGAAACATCACCGTTAATGCAGTTGCTCCGGGGTTTATTGCATCTGACATGACTGCCAAGTTAGGACAAGACATTGAGAAAAAGATATTGGAGACAATCCCATTAGGAAGATATGGCCAACCAGAGGAAGTTGCTGGACTGGTGGAATTCTTGGCTCTTAATCAAGCTTCCAGTTACATCACTGGCCAGGTTTTCACCATTGACGGAGGTATGGTGATGTAA 969 0.4634 MASITGSNCVALRTANFAASGNRKVGQIRQWSPVLKNLRSVSVSGFRHQSNVPFRSSGLRAQVATLEEAGTGAIQKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDVSNEADVEAMIKTAVDAWGTVDVLINNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCIQAAAKVMMKKKKGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDIEKKILETIPLGRYGQPEEVAGLVEFLALNQASSYITGQVFTIDGGMVM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01915 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 217 IPR002347 -
Spst1g01915 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 229 248 IPR002347 -
Spst1g01915 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 167 IPR002347 -
Spst1g01915 322 CDD BKR_SDR_c 81 321 - -
Spst1g01915 322 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 80 260 - -
Spst1g01915 322 Pfam Enoyl-(Acyl carrier protein) reductase 86 320 - -
Spst1g01915 322 Gene3D - 79 322 - -
Spst1g01915 322 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 82 321 IPR011284 GO:0004316|GO:0006633|GO:0051287
Spst1g01915 322 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 216 244 IPR020904 GO:0016491
Spst1g01915 322 PRINTS Glucose/ribitol dehydrogenase family signature 229 248 IPR002347 -
Spst1g01915 322 PRINTS Glucose/ribitol dehydrogenase family signature 283 303 IPR002347 -
Spst1g01915 322 PRINTS Glucose/ribitol dehydrogenase family signature 203 219 IPR002347 -
Spst1g01915 322 PRINTS Glucose/ribitol dehydrogenase family signature 81 98 IPR002347 -
Spst1g01915 322 PRINTS Glucose/ribitol dehydrogenase family signature 156 167 IPR002347 -
Spst1g01915 322 PRINTS Glucose/ribitol dehydrogenase family signature 250 267 IPR002347 -
Spst1g01915 322 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 79 322 - -
Spst1g01915 322 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 76 321 - -
Spst1g01915 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 322 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01915 Spst-Chr1 27399703 27402880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01915 21 322 Acyl Lipid Metabolism Gene Families AT1G24360 68.212 4.61e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01915 K00059 - gmx:100809809 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01915 1 27399703 27402880 Spst3g00126 3 2223520 2232029 PCT