Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00123 ATGCCTATGATTTTTGATGGCACAAGTCATGCAAAAGAATTATGGTCATCTCTGATTTGGGGTACCAGTTTTACTTTTACTATGCCTCCCTCTCACTTTCCTCTTCGTTGGGAAAGCACAGGAGACCAATGGTGGTACGCATCTCCCATTGATTATGCTGCTGCAAATGGCCTCTATGATCTGGTCACTGAGCTTCTCCACCTTGATACCAACCTCCTCATCAAGCTCACTTCCCTTCGCCGAATTCGCCGCCTTGAAGTTGTGTGGGACGATGAGTCTAAGTTTGAGGATGTTGCCAAGTGTCGGTCCAAGGTTGCTAGGAATCTTATGCTTGAGTGTGAAATAGGAAGAGGGCACAACTCTCTCATTCGTGCAGGCTATGGTGGATGGCTTCTCTACACTGCTGCTTCGGCGGGGGATCTGGACTTTGTTCTTGAGTTGTTGGGGAGAGACCCTTTGTTGGTGTTTGGTGAAGGAGAGTATGGTGTCACTGACATGCTGTATGCTGCAGCCAGGGGCAAGAACTGTGAGGTCTTTAACCTCCTGCTTCATTCTGCTCTTTCAAGAAAGGAGTGCCTTGGTGGCAGTGAAGCAGAATTGGAAGAGAAGTTGGATGAAGGTTCCAAGGTTTTCAAGAGGGAAGTGATGAATAGGGCTATTCATGCTGCTGCCAGAGGAGGGAATTGGGAAATACTGAAGCAGCTTCTAGGAAGTGTGTCTGTTTCTCATATTTTGTCTTACAGAGATGCCCAAGGATCTACTGTCTTGCATACAGCAGCTGCAACAGGCCAGGTTGAGGTGGTGAGAAATCTAATTGAATCTTATGATATCATCAACTCAACTAATGCTCAAGGCAATACAGCATTACATGTGGCTTCTTACAGAGGTTATTTACCGGTGGTAGAGATTCTGATAGGAGCATCTCCCTCATTAGCAACTTTAACCAATAACTATGGAGATACTTTTCTTCACAAGGCTGTGGTTGGTTTCAGAAGCCCTGGTTTCTGTAGACTGGACAAGCACATTGAGTTCATGAAGCAATTGACAACTGAAAAGATTGTGAGCATGAAGGACATCATCAATGTCAGGAACAATGAAGGAAGAACAGCACTTCATGTTGCTGTGATTCATAATATCAAATGTGATGTGGTGGAATTACTGATGTCTGTTCCATCAATTGATTTGAACATTCGTGATGCTGATGGCGTGACCCCTTTGGATTATCTTAGGCAAAGATCAAGATCAGCATCGTCAGACATTTTAATCAAGCAGTTAATTTCAGCTGGAGGGATCTCTAACTGTAAGGACTACATGACAAGAAATGCTCTTGTTAACCATCTTAGGACTCATGATGGTATTGGAGCCAGTCCTGGAACATCATTCAGAGTACCAGATTCTGAGATATTCTTGTACACGGGCATTGAGAATTCATGTGATACCAATTATGATCAGGCAAGTGTAGAGTCAAATTCATGGTCAAGTGAAATAAACAATTATGACTCGCTCAATTCCCCAAGCAACAGCAACTCTAGTTCTGTCAACTATGGTGCAAGGCGCTTAAGGTATCTCCTCCAATGGCATGGGACAAGAGACACAAAAGAAGCAGCCTCGAAGTTGGAAGATGATGTTTCTGTGAATTCTTTTAGTTCAAGGAACAACTTGGAGGACCTTCCTACCCCATTGAGGCAAAGATACTCAAAAATGTGTTCTCTTCCAAACAACAAAAGAACACTCTCTATAAGGACTTATCTTCCAAGTCCTTCAGCCAAAAAGTATTTTCATGCAGGCCTAATGCAAGGTGTGATTAAGGTAAAGCCAGAAGGCCCTCTACCTGTTCATTCAACTTCTAGTCTTTTTCAAGAACTATCTATCTCTTCTCATGCTTCGAATAATAACCAAAACCGTGTTGATATAATGGCACCCTCTTGCTCCAATCGACCATTGGATGGTGGTGGTGGTAGCCTACTGTTGAACTATAAGCAGACCTCTTTGAATAAGAAAATGATGAACCGGTATTTTTCTTTTGGAGCACATGGCCAAGCTTTGGAAGATGCAAATAGCTGCACAAAGTCAAATCGCAGCACTAAGAATTTTAGTTCTTTGGTTGCATAA 2112 0.4304 MPMIFDGTSHAKELWSSLIWGTSFTFTMPPSHFPLRWESTGDQWWYASPIDYAAANGLYDLVTELLHLDTNLLIKLTSLRRIRRLEVVWDDESKFEDVAKCRSKVARNLMLECEIGRGHNSLIRAGYGGWLLYTAASAGDLDFVLELLGRDPLLVFGEGEYGVTDMLYAAARGKNCEVFNLLLHSALSRKECLGGSEAELEEKLDEGSKVFKREVMNRAIHAAARGGNWEILKQLLGSVSVSHILSYRDAQGSTVLHTAAATGQVEVVRNLIESYDIINSTNAQGNTALHVASYRGYLPVVEILIGASPSLATLTNNYGDTFLHKAVVGFRSPGFCRLDKHIEFMKQLTTEKIVSMKDIINVRNNEGRTALHVAVIHNIKCDVVELLMSVPSIDLNIRDADGVTPLDYLRQRSRSASSDILIKQLISAGGISNCKDYMTRNALVNHLRTHDGIGASPGTSFRVPDSEIFLYTGIENSCDTNYDQASVESNSWSSEINNYDSLNSPSNSNSSSVNYGARRLRYLLQWHGTRDTKEAASKLEDDVSVNSFSSRNNLEDLPTPLRQRYSKMCSLPNNKRTLSIRTYLPSPSAKKYFHAGLMQGVIKVKPEGPLPVHSTSSLFQELSISSHASNNNQNRVDIMAPSCSNRPLDGGGGSLLLNYKQTSLNKKMMNRYFSFGAHGQALEDANSCTKSNRSTKNFSSLVA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00123 703 Pfam Ankyrin repeats (3 copies) 220 309 IPR002110 GO:0005515
Spst3g00123 703 ProSiteProfiles Ankyrin repeat region circular profile. 251 273 - -
Spst3g00123 703 ProSiteProfiles Ankyrin repeat region circular profile. 284 305 - -
Spst3g00123 703 ProSiteProfiles Ankyrin repeat profile. 251 283 IPR002110 GO:0005515
Spst3g00123 703 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 32 440 - -
Spst3g00123 703 MobiDBLite consensus disorder prediction 684 703 - -
Spst3g00123 703 Pfam Ankyrin repeat 367 399 IPR002110 GO:0005515
Spst3g00123 703 SMART ANK_2a 215 244 IPR002110 GO:0005515
Spst3g00123 703 SMART ANK_2a 284 313 IPR002110 GO:0005515
Spst3g00123 703 SMART ANK_2a 318 358 IPR002110 GO:0005515
Spst3g00123 703 SMART ANK_2a 251 280 IPR002110 GO:0005515
Spst3g00123 703 SMART ANK_2a 366 397 IPR002110 GO:0005515
Spst3g00123 703 SMART ANK_2a 45 74 IPR002110 GO:0005515
Spst3g00123 703 SMART ANK_2a 161 191 IPR002110 GO:0005515
Spst3g00123 703 SMART ANK_2a 127 156 IPR002110 GO:0005515
Spst3g00123 703 SMART ANK_2a 401 434 IPR002110 GO:0005515
Spst3g00123 703 Gene3D - 38 450 IPR036770 -
Spst3g00123 703 ProSiteProfiles Ankyrin repeat profile. 284 316 IPR002110 GO:0005515
Spst3g00123 703 SUPERFAMILY Ankyrin repeat 132 438 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00123 Spst-Chr3 2191420 2194925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00123 132 407 Miscellaneous Gene Families AT2G31820 30.605 4.01e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00123 - - gmx:100791999 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01918 1 27420994 27423553 Spst3g00123 3 2191420 2194925 PCT