Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01577 ATGAGTTCTGGTGGGTACACTGTAGAGGTTACGGGTCTCTCGTCAAATGTCACCGACAAGGATATCCGTGACTTCTTTGCTTTCTCTGGTGTCATCGATACTGTTGAAATTATCAGGTCTGGTGATTATGCTTGTACTGCTTATGTGACTTTCAAAGATGCATATTCTCAAGAAACCGCATGCTTGCTTAGTGGAGCCACTATTTTAGATCAACGCGTATGCATTACACGCTGGGGGAAATATGAAAATGAGTTTGAGTTTTGGAACCAGCCCTCTTACAGTCACGGGGACGAGGCTTCTTCAACTACACCACAGAGCAGTCAATTTGTTTCCTCTGCTGGAGAAGCAGTCACCATGGCTCAAGAAGTCGTGAAGACCATGCTAGCAAAGGGATATGTTCTCAGCAAGGATGCGCTAGCTAAGGCTAAAGACTTTGACGAGTCTCATCAGGTTTCCGCCACTGCAACAGCGAAGGTTTCTGAACTGAGCCAGAGAATTGGCCTCAAAGATAAGATATCTGCTGGTATTGGAGCTGTTAAATCTGTGGATCAGAGATATAATGTCTCTGAAACAACCATTGCGGCCGCATCCACAGCAGGAAGATCGGTAGCAGCGGCTGCAAACTCTTTGGTAAACAGCAGCTATTTTTCAAAAGGAGCCTTGTGGGTGTCAGGTGCTCTAACCCGAGCAGCTGAAGTTGCTTCCGATTTGGGTACTCGCAGGCATACACAGTAA 735 0.4639 MSSGGYTVEVTGLSSNVTDKDIRDFFAFSGVIDTVEIIRSGDYACTAYVTFKDAYSQETACLLSGATILDQRVCITRWGKYENEFEFWNQPSYSHGDEASSTTPQSSQFVSSAGEAVTMAQEVVKTMLAKGYVLSKDALAKAKDFDESHQVSATATAKVSELSQRIGLKDKISAGIGAVKSVDQRYNVSETTIAAASTAGRSVAAAANSLVNSSYFSKGALWVSGALTRAAEVASDLGTRRHTQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01577 244 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 5 240 - -
Spst2g01577 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Spst2g01577 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 71 IPR000504 GO:0003723
Spst2g01577 244 SMART rrm1_1 7 77 IPR000504 GO:0003723
Spst2g01577 244 SUPERFAMILY RNA-binding domain, RBD 4 79 IPR035979 GO:0003676
Spst2g01577 244 Gene3D - 1 84 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01577 Spst-Chr2 14506074 14515214 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01577 - - gsj:114378905 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01577 2 14506074 14515214 Spst2g01577 2 14506074 14515214 ECH
Spst3g02589 3 74330439 74334371 Spst2g01577 2 14506074 14515214 PCT